Variant report

Variant	rs73490792
Chromosome Location	chr9:101069548-101069549
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101064742..101066301-chr9:101069027..101071416,2	K562	blood:
2	chr9:101064801..101068003-chr9:101068500..101071680,4	K562	blood:
3	chr9:101063724..101066732-chr9:101068863..101071288,3	MCF-7	breast:
4	chr9:101068980..101070683-chr9:101072276..101074469,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12006182	1.00[EUR][1000 genomes]
rs1435263	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3205936	1.00[EUR][1000 genomes]
rs34701111	0.83[AMR][1000 genomes]
rs4546761	1.00[EUR][1000 genomes]
rs55739315	1.00[EUR][1000 genomes]
rs55745247	1.00[EUR][1000 genomes]
rs56070637	1.00[EUR][1000 genomes]
rs56072170	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56326520	1.00[EUR][1000 genomes]
rs59263286	1.00[EUR][1000 genomes]
rs60654357	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61563252	0.83[AMR][1000 genomes]
rs6478702	1.00[EUR][1000 genomes]
rs7024796	1.00[EUR][1000 genomes]
rs7025048	1.00[EUR][1000 genomes]
rs7028502	0.85[AMR][1000 genomes]
rs7044963	1.00[EUR][1000 genomes]
rs7048026	1.00[EUR][1000 genomes]
rs73490764	0.83[AMR][1000 genomes]
rs73490778	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490781	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490782	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490784	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490796	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73497005	1.00[EUR][1000 genomes]
rs73497010	1.00[EUR][1000 genomes]
rs73502819	1.00[EUR][1000 genomes]
rs73655418	1.00[EUR][1000 genomes]
rs7849650	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7849709	0.86[AFR][1000 genomes]
rs7849965	0.86[AFR][1000 genomes]
rs7850574	0.87[AFR][1000 genomes]
rs7853722	0.87[AFR][1000 genomes]
rs7859650	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7860369	0.84[AFR][1000 genomes]
rs7863965	0.87[AFR][1000 genomes]
rs7865635	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7865868	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7869257	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv519818	chr9:101024887-101092316	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101061600-101083400	Weak transcription	Brain Angular Gyrus	brain
2	chr9:101061800-101070000	Enhancers	Placenta	Placenta
3	chr9:101062000-101078000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:101063400-101071600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:101063600-101071800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:101066000-101072000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr9:101066600-101076800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:101067000-101072600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:101068400-101069800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:101068400-101069800	Enhancers	Fetal Muscle Leg	muscle
11	chr9:101068400-101069800	Enhancers	Hela-S3	cervix
12	chr9:101068600-101069800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:101068600-101069800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:101068600-101069800	Enhancers	HMEC	breast
15	chr9:101068800-101069800	Enhancers	NHEK	skin
16	chr9:101068800-101070000	Enhancers	HSMMtube	muscle
17	chr9:101069000-101069800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:101069000-101073400	Weak transcription	Fetal Brain Female	brain
19	chr9:101069000-101085800	Weak transcription	Right Atrium	heart
20	chr9:101069400-101070400	Weak transcription	K562	blood
21	chr9:101069400-101076800	Weak transcription	H9 Cell Line	embryonic stem cell

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