Variant report

Variant	rs61563252
Chromosome Location	chr9:101049504-101049505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101039245..101044695-chr9:101044948..101050216,8	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1435263	0.83[AMR][1000 genomes]
rs1469801	0.89[AFR][1000 genomes]
rs1966664	0.83[AFR][1000 genomes]
rs34701111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56072170	0.83[AMR][1000 genomes]
rs57159793	0.91[AFR][1000 genomes]
rs58571777	0.89[AFR][1000 genomes]
rs58885814	0.89[AFR][1000 genomes]
rs60654357	0.83[AMR][1000 genomes]
rs61410033	0.82[AFR][1000 genomes]
rs7041945	0.89[AFR][1000 genomes]
rs73488770	0.89[AFR][1000 genomes]
rs73490764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490778	1.00[AMR][1000 genomes]
rs73490781	1.00[AMR][1000 genomes]
rs73490782	0.83[AMR][1000 genomes]
rs73490784	0.83[AMR][1000 genomes]
rs73490792	0.83[AMR][1000 genomes]
rs73490796	0.83[AMR][1000 genomes]
rs7849650	0.83[AMR][1000 genomes]
rs7849709	0.83[AMR][1000 genomes]
rs7849965	0.83[AMR][1000 genomes]
rs7850574	0.83[AMR][1000 genomes]
rs7853722	0.83[AMR][1000 genomes]
rs7856739	0.86[AFR][1000 genomes]
rs7859650	0.83[AMR][1000 genomes]
rs7860369	0.83[AMR][1000 genomes]
rs7863965	0.83[AMR][1000 genomes]
rs7865635	0.83[AMR][1000 genomes]
rs7865868	0.83[AMR][1000 genomes]
rs9696111	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv519818	chr9:101024887-101092316	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101037200-101051000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:101039800-101051000	Weak transcription	Fetal Intestine Small	intestine
3	chr9:101043400-101051400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:101043600-101051000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr9:101049000-101062800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr9:101049400-101050400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:101049400-101053800	Weak transcription	Brain Germinal Matrix	brain

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