Variant report

Variant	rs73488770
Chromosome Location	chr9:101014451-101014452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100962685..100965590-chr9:101014024..101016888,3	K562	blood:
2	chr9:101007016..101010479-chr9:101012839..101014596,3	MCF-7	breast:
3	chr9:100979926..100982589-chr9:101013541..101016209,2	MCF-7	breast:
4	chr9:101010838..101012752-chr9:101014329..101016410,2	MCF-7	breast:
5	chr9:100951866..100957184-chr9:101014234..101020511,10	K562	blood:
6	chr9:101010268..101015223-chr9:101016008..101021084,8	K562	blood:
7	chr9:100818347..100820083-chr9:101012931..101014892,2	MCF-7	breast:
8	chr9:101011351..101016361-chr9:101016435..101019100,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000106789	Chromatin interaction
ENSG00000095383	Chromatin interaction
ENSG00000095380	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12004336	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914121	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966664	0.88[AFR][1000 genomes]
rs4548296	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57133157	1.00[ASN][1000 genomes]
rs57159793	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58378083	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58571777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58885814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59155179	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61410033	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61563252	0.89[AFR][1000 genomes]
rs7027479	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7041945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73488713	1.00[ASN][1000 genomes]
rs73488720	1.00[ASN][1000 genomes]
rs73488731	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73488782	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7856739	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7869001	1.00[ASN][1000 genomes]
rs9696111	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100989600-101016000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:100991400-101015400	Weak transcription	Brain Anterior Caudate	brain
3	chr9:100992200-101016000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:100995000-101016600	Weak transcription	Brain Angular Gyrus	brain
5	chr9:100996000-101016000	Weak transcription	Pancreas	Pancrea
6	chr9:100996200-101017200	Weak transcription	Ovary	ovary
7	chr9:101004200-101015800	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:101004200-101017200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr9:101005200-101017200	Weak transcription	Brain Germinal Matrix	brain
10	chr9:101006600-101016600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:101006800-101016800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr9:101009000-101017200	Weak transcription	Aorta	Aorta
13	chr9:101009200-101015800	Weak transcription	Stomach Mucosa	stomach
14	chr9:101009200-101016600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr9:101010200-101015000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:101010200-101015200	Enhancers	A549	lung
17	chr9:101010200-101015600	Enhancers	NHDF-Ad	bronchial
18	chr9:101010200-101016600	Enhancers	Primary B cells from cord blood	blood
19	chr9:101010400-101014600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:101010400-101014600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr9:101010400-101014600	Genic enhancers	Sigmoid Colon	Sigmoid Colon
22	chr9:101010400-101014800	Genic enhancers	Lung	lung
23	chr9:101010600-101015400	Genic enhancers	Fetal Intestine Small	intestine
24	chr9:101010600-101017200	Enhancers	Placenta Amnion	Placenta Amnion
25	chr9:101011000-101016600	Weak transcription	Colon Smooth Muscle	Colon
26	chr9:101011600-101014800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr9:101011600-101015200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr9:101011600-101015200	Weak transcription	Duodenum Mucosa	Duodenum
29	chr9:101011600-101015400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr9:101011600-101015400	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr9:101011600-101015800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr9:101011600-101015800	Weak transcription	Fetal Thymus	thymus
33	chr9:101011600-101016600	Weak transcription	Primary B cells from peripheral blood	blood
34	chr9:101011600-101017200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:101011600-101017200	Weak transcription	Fetal Muscle Trunk	muscle
36	chr9:101011800-101015600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr9:101011800-101016000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr9:101011800-101016000	Weak transcription	Adipose Nuclei	Adipose
39	chr9:101011800-101016400	Weak transcription	Primary T cells from cord blood	blood
40	chr9:101011800-101016600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr9:101011800-101017200	Weak transcription	Left Ventricle	heart
42	chr9:101012000-101015200	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr9:101012200-101014800	Genic enhancers	Primary monocytes fromperipheralblood	blood
44	chr9:101012400-101014800	Strong transcription	Thymus	Thymus
45	chr9:101012400-101015000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr9:101012400-101015400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr9:101012400-101015600	Enhancers	NH-A	brain
48	chr9:101012600-101014800	Weak transcription	Brain Cingulate Gyrus	brain
49	chr9:101012600-101016600	Weak transcription	Primary hematopoietic stem cells	blood
50	chr9:101012800-101016600	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links