Variant report

Variant	rs73490796
Chromosome Location	chr9:101073337-101073338
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101070579..101073591-chr9:101076842..101079263,3	MCF-7	breast:
2	chr9:101068980..101070683-chr9:101072276..101074469,2	K562	blood:
3	chr9:101071599..101074576-chr9:101177617..101179609,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12006182	1.00[EUR][1000 genomes]
rs1435263	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3205936	1.00[EUR][1000 genomes]
rs34701111	0.83[AMR][1000 genomes]
rs4546761	1.00[EUR][1000 genomes]
rs55739315	1.00[EUR][1000 genomes]
rs55745247	1.00[EUR][1000 genomes]
rs56070637	1.00[EUR][1000 genomes]
rs56072170	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56326520	1.00[EUR][1000 genomes]
rs59263286	1.00[EUR][1000 genomes]
rs60654357	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61563252	0.83[AMR][1000 genomes]
rs6478702	1.00[EUR][1000 genomes]
rs7024796	1.00[EUR][1000 genomes]
rs7025048	1.00[EUR][1000 genomes]
rs7028502	0.85[AMR][1000 genomes]
rs7044963	1.00[EUR][1000 genomes]
rs7048026	1.00[EUR][1000 genomes]
rs73490764	0.83[AMR][1000 genomes]
rs73490778	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490781	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490782	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490784	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490792	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73497005	1.00[EUR][1000 genomes]
rs73497010	1.00[EUR][1000 genomes]
rs73502819	1.00[EUR][1000 genomes]
rs73655418	1.00[EUR][1000 genomes]
rs7849650	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7849709	0.81[AFR][1000 genomes]
rs7849965	0.81[AFR][1000 genomes]
rs7850574	0.82[AFR][1000 genomes]
rs7853722	0.82[AFR][1000 genomes]
rs7859650	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7863965	0.82[AFR][1000 genomes]
rs7865635	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7865868	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7869257	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv519818	chr9:101024887-101092316	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101061600-101083400	Weak transcription	Brain Angular Gyrus	brain
2	chr9:101062000-101078000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:101066600-101076800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:101069000-101073400	Weak transcription	Fetal Brain Female	brain
5	chr9:101069000-101085800	Weak transcription	Right Atrium	heart
6	chr9:101069400-101076800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:101070800-101078000	Weak transcription	Fetal Brain Male	brain
8	chr9:101072000-101078000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:101072600-101076400	Weak transcription	Placenta	Placenta
10	chr9:101072800-101073800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:101072800-101074200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:101073000-101073400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:101073000-101073400	Enhancers	A549	lung
14	chr9:101073000-101073600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr9:101073000-101073600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr9:101073000-101073600	Enhancers	NHDF-Ad	bronchial
17	chr9:101073200-101073400	Enhancers	NHLF	lung
18	chr9:101073200-101073600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr9:101073200-101073800	Flanking Active TSS	K562	blood

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