Variant report

Variant	rs7048026
Chromosome Location	chr9:101171334-101171335
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101170533..101173202-chr9:101218513..101220948,2	MCF-7	breast:
2	chr9:101165085..101169504-chr9:101169780..101173319,7	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12006182	1.00[EUR][1000 genomes]
rs12235930	0.83[YRI][hapmap]
rs1435263	1.00[EUR][1000 genomes]
rs3205936	1.00[EUR][1000 genomes]
rs4546761	1.00[EUR][1000 genomes]
rs55739315	1.00[EUR][1000 genomes]
rs55745247	1.00[EUR][1000 genomes]
rs56070637	1.00[EUR][1000 genomes]
rs56072170	1.00[EUR][1000 genomes]
rs56326520	1.00[EUR][1000 genomes]
rs57960021	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59263286	1.00[EUR][1000 genomes]
rs60654357	1.00[EUR][1000 genomes]
rs6478702	1.00[EUR][1000 genomes]
rs7024796	1.00[EUR][1000 genomes]
rs7025048	1.00[EUR][1000 genomes]
rs7044963	1.00[EUR][1000 genomes]
rs73490778	1.00[EUR][1000 genomes]
rs73490781	1.00[EUR][1000 genomes]
rs73490782	1.00[EUR][1000 genomes]
rs73490784	1.00[EUR][1000 genomes]
rs73490792	1.00[EUR][1000 genomes]
rs73490796	1.00[EUR][1000 genomes]
rs73497005	1.00[EUR][1000 genomes]
rs73497010	1.00[EUR][1000 genomes]
rs73502819	1.00[EUR][1000 genomes]
rs73655418	1.00[EUR][1000 genomes]
rs7849650	1.00[EUR][1000 genomes]
rs7859650	1.00[EUR][1000 genomes]
rs7865868	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101144000-101172000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr9:101156600-101172000	Weak transcription	Fetal Brain Female	brain
3	chr9:101159000-101172800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:101165000-101174600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr9:101167000-101171800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:101167800-101172200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:101169000-101171400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr9:101169200-101171400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:101169800-101172400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr9:101169800-101173200	Enhancers	H9 Cell Line	embryonic stem cell
11	chr9:101170000-101172400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr9:101170000-101172400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr9:101170000-101172400	Weak transcription	Fetal Heart	heart
14	chr9:101170200-101172400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr9:101170200-101172400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr9:101170200-101174000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr9:101170200-101174800	Enhancers	Fetal Thymus	thymus
18	chr9:101170400-101172400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr9:101170800-101172400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr9:101170800-101174400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:101171000-101171800	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links