Variant report

Variant	rs7048744
Chromosome Location	chr9:101159307-101159308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10818876	0.87[CHD][hapmap]
rs10986000	1.00[AMR][1000 genomes]
rs10986071	1.00[AMR][1000 genomes]
rs10986112	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10986118	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10986142	1.00[AMR][1000 genomes]
rs11559334	1.00[AMR][1000 genomes]
rs16915623	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7034300	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101128200-101164200	Weak transcription	Brain Germinal Matrix	brain
2	chr9:101144000-101172000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:101156400-101159600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr9:101156600-101172000	Weak transcription	Fetal Brain Female	brain
5	chr9:101157800-101159400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:101158000-101161400	Weak transcription	Spleen	Spleen
7	chr9:101158400-101159400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:101158600-101159400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr9:101158600-101159600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr9:101158600-101163800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr9:101158800-101159400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr9:101159000-101164000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr9:101159000-101172800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:101159200-101159400	Bivalent Enhancer	Fetal Muscle Leg	muscle
15	chr9:101159200-101159800	Enhancers	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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