Variant report

Variant	rs10986000
Chromosome Location	chr9:101119950-101119951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10985939	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10985995	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10985999	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10986071	1.00[AMR][1000 genomes]
rs10986112	1.00[AMR][1000 genomes]
rs10986142	1.00[AMR][1000 genomes]
rs11559334	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7045216	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7048744	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101118000-101122600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
2	chr9:101118800-101121000	Enhancers	Osteobl	bone
3	chr9:101118800-101127400	Weak transcription	Brain Germinal Matrix	brain
4	chr9:101118800-101127400	Weak transcription	Fetal Brain Female	brain
5	chr9:101119200-101121200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr9:101119400-101121200	Enhancers	HUVEC	blood vessel
7	chr9:101119600-101120000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:101119600-101121200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:101119600-101121200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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