Variant report

Variant	rs10986142
Chromosome Location	chr9:101173955-101173956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101161674..101164575-chr9:101172101..101174327,2	MCF-7	breast:
2	chr9:101171860..101174241-chr9:101230712..101233316,2	K562	blood:
3	chr9:101173120..101175808-chr9:101177158..101179626,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10986000	1.00[AMR][1000 genomes]
rs10986071	1.00[AMR][1000 genomes]
rs10986112	1.00[AMR][1000 genomes]
rs11559334	1.00[AMR][1000 genomes]
rs7048744	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101165000-101174600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr9:101170200-101174000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr9:101170200-101174800	Enhancers	Fetal Thymus	thymus
4	chr9:101170800-101174400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:101172200-101175400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:101172400-101174000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr9:101172400-101174400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:101172400-101175400	Weak transcription	Fetal Brain Male	brain
9	chr9:101172400-101176800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:101172400-101177800	Weak transcription	Right Atrium	heart
11	chr9:101172600-101174600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr9:101172800-101176400	Weak transcription	HUVEC	blood vessel
13	chr9:101173000-101175400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:101173000-101176000	Weak transcription	Lung	lung
15	chr9:101173200-101174400	Weak transcription	Fetal Stomach	stomach
16	chr9:101173200-101174600	Weak transcription	Fetal Muscle Leg	muscle
17	chr9:101173200-101175000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr9:101173200-101175800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr9:101173400-101174400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr9:101173400-101174400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:101173400-101175200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr9:101173400-101177800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr9:101173600-101174000	Weak transcription	K562	blood
24	chr9:101173600-101174600	Weak transcription	Fetal Kidney	kidney
25	chr9:101173600-101175800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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