Variant report

Variant	rs10117265
Chromosome Location	chr9:101096102-101096103
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10125047	1.00[ASN][1000 genomes]
rs10441752	1.00[CHB][hapmap]
rs10985425	1.00[CHB][hapmap]
rs10985528	1.00[CHB][hapmap]
rs10985573	1.00[CHB][hapmap]
rs12340587	1.00[ASN][1000 genomes]
rs12352986	1.00[CHB][hapmap]
rs16914199	1.00[CHB][hapmap]
rs16915689	1.00[CHB][hapmap]
rs16915747	1.00[ASN][1000 genomes]
rs17690174	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs34891516	1.00[ASN][1000 genomes]
rs553139	1.00[CHB][hapmap]
rs55683990	1.00[ASN][1000 genomes]
rs583115	1.00[CHB][hapmap]
rs644842	1.00[CHB][hapmap]
rs6478670	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7871923	0.95[GIH][hapmap]
rs7875502	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9299277	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101087400-101096400	Weak transcription	NH-A	brain
2	chr9:101090400-101098400	Enhancers	HUVEC	blood vessel
3	chr9:101092600-101097000	Weak transcription	Fetal Intestine Large	intestine
4	chr9:101094200-101096200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:101094400-101104400	Weak transcription	Brain Angular Gyrus	brain
6	chr9:101095000-101098400	Enhancers	K562	blood
7	chr9:101095200-101096400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr9:101095400-101096600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:101095400-101096600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:101095400-101097400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:101095400-101102800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:101095600-101096800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:101095800-101096800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:101095800-101096800	Enhancers	NHLF	lung
15	chr9:101095800-101097400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:101095800-101097400	Enhancers	HMEC	breast
17	chr9:101095800-101097400	Enhancers	NHEK	skin
18	chr9:101096000-101096200	Enhancers	Spleen	Spleen
19	chr9:101096000-101096400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:101096000-101096600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:101096000-101096600	Enhancers	Hela-S3	cervix
22	chr9:101096000-101096800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:101096000-101096800	Enhancers	Osteobl	bone
24	chr9:101096000-101097200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr9:101096000-101097200	Enhancers	NHDF-Ad	bronchial

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