Variant report

Variant	rs10114211
Chromosome Location	chr9:101022658-101022659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101016141..101018439-chr9:101020507..101022977,2	MCF-7	breast:
2	chr9:101010134..101012336-chr9:101021281..101022782,2	K562	blood:
3	chr9:101022063..101024175-chr9:101026064..101028233,2	K562	blood:
4	chr9:101016008..101018748-chr9:101020851..101024407,3	MCF-7	breast:
5	chr9:100686308..100689678-chr9:101021142..101024168,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095383	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10046819	1.00[ASN][1000 genomes]
rs10123613	0.87[AFR][1000 genomes]
rs10217245	1.00[ASN][1000 genomes]
rs10217458	1.00[ASN][1000 genomes]
rs10441752	1.00[ASN][1000 genomes]
rs10818608	1.00[ASN][1000 genomes]
rs10985425	1.00[ASN][1000 genomes]
rs10985528	1.00[ASN][1000 genomes]
rs10985545	1.00[ASN][1000 genomes]
rs10985570	1.00[ASN][1000 genomes]
rs10985573	1.00[ASN][1000 genomes]
rs10985578	1.00[ASN][1000 genomes]
rs10985730	1.00[ASN][1000 genomes]
rs12339078	1.00[ASN][1000 genomes]
rs12342843	1.00[ASN][1000 genomes]
rs12342968	1.00[ASN][1000 genomes]
rs12347046	1.00[ASN][1000 genomes]
rs12351571	1.00[ASN][1000 genomes]
rs12352986	1.00[ASN][1000 genomes]
rs16914199	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914443	1.00[ASN][1000 genomes]
rs28524952	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28578965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28660099	0.87[AFR][1000 genomes]
rs28680284	0.87[AFR][1000 genomes]
rs28814444	0.95[EUR][1000 genomes]
rs34562398	1.00[ASN][1000 genomes]
rs36074616	1.00[ASN][1000 genomes]
rs41273923	1.00[ASN][1000 genomes]
rs41273925	1.00[ASN][1000 genomes]
rs41283618	1.00[ASN][1000 genomes]
rs4742725	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55974101	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57611604	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58371820	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59519660	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61201457	1.00[ASN][1000 genomes]
rs73490714	1.00[ASN][1000 genomes]
rs73490718	1.00[ASN][1000 genomes]
rs73490720	1.00[ASN][1000 genomes]
rs73490723	1.00[ASN][1000 genomes]
rs73490727	1.00[ASN][1000 genomes]
rs73490728	1.00[ASN][1000 genomes]
rs9299277	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101019200-101024800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:101019400-101022800	Weak transcription	Liver	Liver
3	chr9:101019400-101023000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr9:101019400-101024400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:101019400-101024400	Weak transcription	HSMM	muscle
6	chr9:101019600-101024000	Weak transcription	HSMMtube	muscle
7	chr9:101019600-101024400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:101019600-101026200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:101019600-101027200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr9:101020200-101024400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:101022400-101022800	Enhancers	HepG2	liver
12	chr9:101022400-101022800	Enhancers	K562	blood

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