Variant report

Variant	rs41273923
Chromosome Location	chr9:101053123-101053124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100818995..100821317-chr9:101051621..101054241,2	K562	blood:
2	chr9:101049774..101053402-chr9:101054314..101056733,3	K562	blood:
3	chr9:101051613..101053576-chr9:101054948..101058206,3	K562	blood:

Variant related genes	Relation type
ENSG00000095380	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10046819	1.00[ASN][1000 genomes]
rs10114211	1.00[ASN][1000 genomes]
rs10217245	1.00[ASN][1000 genomes]
rs10217458	1.00[ASN][1000 genomes]
rs10441752	1.00[ASN][1000 genomes]
rs10818608	1.00[ASN][1000 genomes]
rs10985425	1.00[ASN][1000 genomes]
rs10985528	1.00[ASN][1000 genomes]
rs10985545	1.00[ASN][1000 genomes]
rs10985570	1.00[ASN][1000 genomes]
rs10985573	1.00[ASN][1000 genomes]
rs10985578	1.00[ASN][1000 genomes]
rs10985730	1.00[ASN][1000 genomes]
rs12339078	1.00[ASN][1000 genomes]
rs12342843	1.00[ASN][1000 genomes]
rs12342968	1.00[ASN][1000 genomes]
rs12347046	1.00[ASN][1000 genomes]
rs12351571	1.00[ASN][1000 genomes]
rs12352986	1.00[ASN][1000 genomes]
rs13302005	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16914199	1.00[ASN][1000 genomes]
rs16914443	1.00[ASN][1000 genomes]
rs28524952	1.00[ASN][1000 genomes]
rs28578965	1.00[ASN][1000 genomes]
rs28814444	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34153997	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34562398	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35173456	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35704761	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36074616	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41273925	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41283618	1.00[ASN][1000 genomes]
rs4742725	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55974101	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57611604	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58371820	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59519660	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61201457	1.00[ASN][1000 genomes]
rs73490714	1.00[ASN][1000 genomes]
rs73490718	1.00[ASN][1000 genomes]
rs73490720	1.00[ASN][1000 genomes]
rs73490723	1.00[ASN][1000 genomes]
rs73490727	1.00[ASN][1000 genomes]
rs73490728	1.00[ASN][1000 genomes]
rs9299277	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv519818	chr9:101024887-101092316	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101049000-101062800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:101049400-101053800	Weak transcription	Brain Germinal Matrix	brain
3	chr9:101049800-101060600	Weak transcription	Brain Angular Gyrus	brain
4	chr9:101050000-101053600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:101050000-101054000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:101050400-101055400	Enhancers	Placenta	Placenta
7	chr9:101050600-101064600	Weak transcription	Fetal Brain Female	brain
8	chr9:101051200-101055400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:101051800-101053800	Weak transcription	K562	blood
10	chr9:101052400-101053800	Weak transcription	Fetal Intestine Large	intestine
11	chr9:101052400-101054000	Weak transcription	Fetal Intestine Small	intestine
12	chr9:101052400-101054200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:101052400-101054600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr9:101052400-101065800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:101052800-101054200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:101053000-101056000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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