Variant report

Variant	rs2987048
Chromosome Location	chr9:15903344-15903345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1169475	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1169476	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1169477	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1169481	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1169482	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1184913	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1186048	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1186387	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1341733	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1773062	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1891209	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1935223	0.89[EUR][1000 genomes]
rs2094519	0.86[EUR][1000 genomes]
rs2094520	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2149230	0.84[EUR][1000 genomes]
rs2182934	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2182935	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2769716	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2794631	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2794638	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2987046	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2987053	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2987054	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2987057	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2987058	0.81[EUR][1000 genomes]
rs2987060	0.84[EUR][1000 genomes]
rs2987061	0.84[EUR][1000 genomes]
rs3008691	0.82[EUR][1000 genomes]
rs3008692	0.84[EUR][1000 genomes]
rs3008693	0.84[EUR][1000 genomes]
rs3008695	0.84[EUR][1000 genomes]
rs3008698	0.86[EUR][1000 genomes]
rs3008700	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs770203	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs770206	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7860856	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7861105	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15877000-15903400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:15902000-15914200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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