Variant report

Variant	rs2794631
Chromosome Location	chr9:15902516-15902517
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs1081243	0.87[EUR][1000 genomes]
rs1081244	0.84[EUR][1000 genomes]
rs1081246	0.87[EUR][1000 genomes]
rs1081247	0.87[EUR][1000 genomes]
rs1169469	0.85[EUR][1000 genomes]
rs1169470	0.84[EUR][1000 genomes]
rs1169471	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1169472	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1169474	0.85[EUR][1000 genomes]
rs1169475	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1169476	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1169477	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1169481	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1169482	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1177610	0.86[EUR][1000 genomes]
rs1177611	0.86[EUR][1000 genomes]
rs1184568	0.89[EUR][1000 genomes]
rs1184913	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1185652	0.86[EUR][1000 genomes]
rs1186048	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1186387	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1328281	0.85[EUR][1000 genomes]
rs1341733	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1341739	0.82[EUR][1000 genomes]
rs1361607	0.82[EUR][1000 genomes]
rs1361608	0.82[EUR][1000 genomes]
rs1578556	0.82[EUR][1000 genomes]
rs1578557	0.83[EUR][1000 genomes]
rs1578558	0.83[EUR][1000 genomes]
rs1582200	0.83[EUR][1000 genomes]
rs1752777	0.84[EUR][1000 genomes]
rs1773046	0.85[EUR][1000 genomes]
rs1773062	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1815697	0.85[EUR][1000 genomes]
rs1891209	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1935220	0.81[EUR][1000 genomes]
rs1935221	0.85[EUR][1000 genomes]
rs1935223	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1954220	0.85[EUR][1000 genomes]
rs2094519	0.96[EUR][1000 genomes]
rs2094520	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2105313	0.85[EUR][1000 genomes]
rs2105314	0.85[EUR][1000 genomes]
rs2149230	0.94[EUR][1000 genomes]
rs2182934	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2182935	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2769714	0.85[EUR][1000 genomes]
rs2769716	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2794624	0.85[EUR][1000 genomes]
rs2794625	0.85[EUR][1000 genomes]
rs2794626	0.85[EUR][1000 genomes]
rs2794627	0.85[EUR][1000 genomes]
rs2794628	0.85[EUR][1000 genomes]
rs2794629	0.85[EUR][1000 genomes]
rs2794638	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2987045	0.85[EUR][1000 genomes]
rs2987046	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2987048	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2987053	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2987054	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2987057	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2987058	0.91[EUR][1000 genomes]
rs2987060	0.94[EUR][1000 genomes]
rs2987061	0.94[EUR][1000 genomes]
rs2987062	0.85[EUR][1000 genomes]
rs2987065	0.83[EUR][1000 genomes]
rs2987066	0.89[EUR][1000 genomes]
rs2995024	0.86[EUR][1000 genomes]
rs2995025	0.88[EUR][1000 genomes]
rs3008680	0.89[EUR][1000 genomes]
rs3008682	0.85[EUR][1000 genomes]
rs3008683	0.86[EUR][1000 genomes]
rs3008685	0.85[EUR][1000 genomes]
rs3008691	0.92[EUR][1000 genomes]
rs3008692	0.94[EUR][1000 genomes]
rs3008693	0.94[EUR][1000 genomes]
rs3008695	0.94[EUR][1000 genomes]
rs3008698	0.96[EUR][1000 genomes]
rs3008700	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3124459	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6474978	0.88[EUR][1000 genomes]
rs6474979	0.87[EUR][1000 genomes]
rs7028328	0.84[EUR][1000 genomes]
rs7039881	0.82[EUR][1000 genomes]
rs7388793	0.81[EUR][1000 genomes]
rs770190	0.89[EUR][1000 genomes]
rs770192	0.85[EUR][1000 genomes]
rs770193	0.88[EUR][1000 genomes]
rs770194	0.85[EUR][1000 genomes]
rs770195	0.84[EUR][1000 genomes]
rs770197	0.88[EUR][1000 genomes]
rs770198	0.86[EUR][1000 genomes]
rs770199	0.86[EUR][1000 genomes]
rs770200	0.87[EUR][1000 genomes]
rs770201	0.88[EUR][1000 genomes]
rs770202	0.88[EUR][1000 genomes]
rs770203	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs770204	0.88[EUR][1000 genomes]
rs770205	0.88[EUR][1000 genomes]
rs770206	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs770207	0.87[EUR][1000 genomes]
rs770210	0.86[EUR][1000 genomes]
rs770212	0.86[EUR][1000 genomes]
rs770214	0.86[EUR][1000 genomes]
rs770217	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs770218	0.88[EUR][1000 genomes]
rs770219	0.82[EUR][1000 genomes]
rs7860354	0.81[EUR][1000 genomes]
rs7860463	0.85[EUR][1000 genomes]
rs7860856	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7861105	0.94[EUR][1000 genomes]
rs809493	0.88[EUR][1000 genomes]
rs9406546	0.85[EUR][1000 genomes]
rs9407664	0.82[EUR][1000 genomes]
rs9407665	0.84[EUR][1000 genomes]
rs9407668	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15877000-15903400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:15902000-15914200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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