Variant report

Variant	rs770219
Chromosome Location	chr9:15892469-15892470
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 154 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:152)

rs_ID	r²[population]
rs1081243	0.81[EUR][1000 genomes]
rs1081246	0.81[EUR][1000 genomes]
rs1081247	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs10962193	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs10962194	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs1169469	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1169470	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1169471	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs1169472	0.80[EUR][1000 genomes]
rs1169474	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1169475	0.87[EUR][1000 genomes]
rs1169476	0.88[EUR][1000 genomes]
rs1169477	0.82[EUR][1000 genomes]
rs1169478	0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs1169480	0.87[YRI][hapmap]
rs1169481	0.80[CEU][hapmap];0.87[EUR][1000 genomes]
rs1177610	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1177611	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1184568	0.83[EUR][1000 genomes]
rs1184912	0.84[ASN][1000 genomes]
rs1184913	0.87[EUR][1000 genomes]
rs1185652	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1186048	0.87[EUR][1000 genomes]
rs1186387	0.82[EUR][1000 genomes]
rs11999303	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs12005062	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs12005485	0.83[ASN][1000 genomes]
rs12005521	0.83[ASN][1000 genomes]
rs12685963	0.83[ASN][1000 genomes]
rs1328281	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1328287	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1328288	0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs1341733	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs1359953	0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs1536685	0.89[JPT][hapmap]
rs1536686	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1536687	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1578556	0.83[EUR][1000 genomes]
rs1578557	0.83[EUR][1000 genomes]
rs1578558	0.83[EUR][1000 genomes]
rs1582200	0.83[EUR][1000 genomes]
rs16933544	0.89[JPT][hapmap]
rs16933805	0.89[JPT][hapmap]
rs16933814	0.89[JPT][hapmap]
rs1752777	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1773046	0.86[EUR][1000 genomes]
rs1773062	0.87[EUR][1000 genomes]
rs1815697	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1891209	0.82[EUR][1000 genomes]
rs1935220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1935221	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1935223	0.83[EUR][1000 genomes]
rs2094519	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2094520	0.82[EUR][1000 genomes]
rs2105313	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2105314	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2149230	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2182934	0.80[CEU][hapmap]
rs2182935	0.80[CEU][hapmap];0.80[EUR][1000 genomes]
rs2769714	0.86[EUR][1000 genomes]
rs2769716	0.87[EUR][1000 genomes]
rs2794624	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2794625	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2794626	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2794627	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2794628	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2794629	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2794631	0.82[EUR][1000 genomes]
rs2794632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2794633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2794634	0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs2794636	0.85[YRI][hapmap]
rs2794638	0.82[EUR][1000 genomes]
rs2794645	0.82[AFR][1000 genomes]
rs2794646	0.81[AFR][1000 genomes]
rs2987045	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2987046	0.81[EUR][1000 genomes]
rs2987053	0.82[EUR][1000 genomes]
rs2987054	0.80[CEU][hapmap]
rs2987057	0.80[CEU][hapmap];0.80[EUR][1000 genomes]
rs2987058	0.83[ASN][1000 genomes]
rs2987060	0.80[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2987061	0.80[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2987062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2987064	0.88[CHB][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2987069	0.90[YRI][hapmap]
rs2987071	0.96[YRI][hapmap]
rs2995024	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2995025	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3008683	0.82[EUR][1000 genomes]
rs3008684	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3008685	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3008686	0.96[YRI][hapmap]
rs3008691	0.80[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3008692	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3008693	0.80[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3008695	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3008698	0.80[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3008700	0.80[EUR][1000 genomes]
rs6474978	0.82[EUR][1000 genomes]
rs6474979	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs7026090	0.80[ASN][1000 genomes]
rs7028328	0.84[EUR][1000 genomes]
rs7029375	0.80[ASN][1000 genomes]
rs7029410	0.80[ASN][1000 genomes]
rs7035048	0.89[JPT][hapmap]
rs7039881	0.82[EUR][1000 genomes]
rs7040071	0.80[ASN][1000 genomes]
rs7040549	0.80[ASN][1000 genomes]
rs7040580	0.80[ASN][1000 genomes]
rs7044984	0.89[JPT][hapmap]
rs7388793	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs770190	0.83[EUR][1000 genomes]
rs770192	0.87[EUR][1000 genomes]
rs770193	0.83[EUR][1000 genomes]
rs770194	0.85[EUR][1000 genomes]
rs770195	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs770196	0.80[CEU][hapmap]
rs770197	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs770198	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs770199	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs770200	0.80[CEU][hapmap];0.87[EUR][1000 genomes]
rs770201	0.80[CEU][hapmap];0.88[EUR][1000 genomes]
rs770202	0.80[CEU][hapmap];0.88[EUR][1000 genomes]
rs770203	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs770204	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs770205	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs770206	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs770207	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs770209	1.00[CEU][hapmap]
rs770210	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs770212	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs770213	0.90[YRI][hapmap]
rs770214	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs770215	0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs770216	1.00[CEU][hapmap]
rs770217	0.90[EUR][1000 genomes]
rs770218	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7856877	0.86[EUR][1000 genomes]
rs7860354	0.81[EUR][1000 genomes]
rs7861105	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7861533	0.80[ASN][1000 genomes]
rs7866472	0.89[JPT][hapmap]
rs7866699	0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs7867018	0.80[ASN][1000 genomes]
rs7869609	0.89[JPT][hapmap]
rs7870166	0.89[JPT][hapmap]
rs7870244	0.89[JPT][hapmap]
rs809493	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9407664	0.82[EUR][1000 genomes]
rs9407665	0.82[EUR][1000 genomes]
rs9407668	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15877000-15903400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:15889000-15892800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:15890400-15893400	Weak transcription	Osteobl	bone
4	chr9:15891800-15892800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
5	chr9:15891800-15893400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:15892200-15893200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:15892200-15893400	ZNF genes & repeats	Primary hematopoietic stem cells	blood

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