Variant report

Variant	rs2987064
Chromosome Location	chr9:15926698-15926699
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1169470	0.89[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1169474	0.86[ASN][1000 genomes]
rs1169476	0.81[EUR][1000 genomes]
rs1169478	0.93[YRI][hapmap]
rs1169480	0.83[YRI][hapmap]
rs1177610	0.89[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1177611	0.89[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1185652	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1328281	0.84[ASN][1000 genomes]
rs1328285	0.95[EUR][1000 genomes]
rs1328287	1.00[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1328288	1.00[YRI][hapmap]
rs1359953	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs1536685	0.82[ASN][1000 genomes]
rs1536686	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1536687	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933814	0.82[ASN][1000 genomes]
rs1752777	0.83[ASN][1000 genomes]
rs1815697	0.89[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs1935220	0.89[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs1935221	0.88[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs2094519	1.00[CHB][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2105313	0.84[ASN][1000 genomes]
rs2105314	0.89[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs2149230	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2794624	0.89[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs2794625	0.88[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs2794626	0.84[ASN][1000 genomes]
rs2794627	0.89[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs2794628	0.89[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs2794629	0.86[ASN][1000 genomes]
rs2794632	0.89[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs2794633	0.88[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2794634	0.93[YRI][hapmap]
rs2794636	0.81[YRI][hapmap]
rs2987045	0.86[ASN][1000 genomes]
rs2987058	0.97[ASN][1000 genomes]
rs2987059	0.87[ASN][1000 genomes]
rs2987060	1.00[CHB][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2987061	1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2987062	0.88[CHB][hapmap];0.81[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2987063	0.95[EUR][1000 genomes]
rs2987065	0.83[EUR][1000 genomes]
rs2987069	0.87[YRI][hapmap]
rs2987071	0.93[YRI][hapmap]
rs2987076	0.91[CEU][hapmap]
rs2995024	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2995025	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3008669	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs3008682	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs3008683	0.88[EUR][1000 genomes]
rs3008684	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3008685	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3008686	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs3008691	1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3008692	0.99[ASN][1000 genomes]
rs3008693	1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3008695	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3008698	1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[YRI][hapmap];0.99[ASN][1000 genomes]
rs3118737	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7044984	0.82[ASN][1000 genomes]
rs770200	0.81[EUR][1000 genomes]
rs770204	0.88[CHB][hapmap];0.80[EUR][1000 genomes]
rs770205	0.88[CHB][hapmap];0.80[EUR][1000 genomes]
rs770207	0.89[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs770213	0.90[YRI][hapmap]
rs770215	0.90[YRI][hapmap]
rs770219	0.88[CHB][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7861105	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7866472	0.80[ASN][1000 genomes]
rs809493	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753625	chr9:15914055-15980320	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
3	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15918200-15930800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:15920000-15936000	Weak transcription	Ovary	ovary
3	chr9:15922800-15930800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:15922800-15931600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:15923000-15929600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr9:15926400-15928000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr9:15926400-15928200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:15926400-15928400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:15926600-15927600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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