Variant report

Variant	rs1359953
Chromosome Location	chr9:15928495-15928496
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs1009468	1.00[CHB][hapmap]
rs10283865	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs10810438	0.83[CHB][hapmap]
rs10810440	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs10810442	0.89[CHB][hapmap]
rs10962147	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs10962149	0.89[CHB][hapmap]
rs10962152	0.89[CHB][hapmap]
rs10962153	0.89[CHB][hapmap]
rs10962170	0.89[CHB][hapmap]
rs1169478	0.86[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1169479	0.89[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1169480	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12341679	0.88[CHB][hapmap]
rs1328286	0.89[CEU][hapmap];0.95[EUR][1000 genomes]
rs1328287	0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs1328288	0.91[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1341734	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs1355173	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs1359952	0.81[EUR][1000 genomes]
rs1536686	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs1536687	0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs1539171	1.00[CHB][hapmap]
rs1572978	0.89[CHB][hapmap]
rs1891211	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs1891212	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs1927696	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1984246	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs2066292	0.94[CHB][hapmap]
rs2094519	0.81[YRI][hapmap]
rs2096121	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs2149231	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs2153725	0.89[CHB][hapmap]
rs2153726	0.89[CHB][hapmap]
rs2153727	1.00[CHB][hapmap]
rs2185665	0.89[CHB][hapmap]
rs2225181	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2382553	0.89[CHB][hapmap]
rs2794634	0.83[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2794636	0.81[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.84[ASN][1000 genomes]
rs2794645	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2794646	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2794647	0.81[EUR][1000 genomes]
rs2891007	0.89[CHB][hapmap]
rs2987009	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs2987060	0.82[YRI][hapmap]
rs2987061	0.89[YRI][hapmap]
rs2987062	0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs2987064	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs2987069	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2987070	0.90[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2987071	0.80[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2987072	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3008678	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3008681	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3008684	0.83[AFR][1000 genomes]
rs3008686	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3008691	0.83[YRI][hapmap]
rs3008693	0.83[YRI][hapmap]
rs3008698	0.83[YRI][hapmap]
rs6474966	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs7019205	1.00[CHB][hapmap]
rs7019851	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs7027202	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs7032457	1.00[CHB][hapmap]
rs7032634	0.89[CHB][hapmap]
rs7034781	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs7045018	0.89[CHB][hapmap]
rs7047045	0.89[CHB][hapmap]
rs735962	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7467207	0.83[CHB][hapmap]
rs770191	1.00[CHB][hapmap]
rs770211	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs770213	0.83[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs770215	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes]
rs770219	0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs7853744	1.00[CHB][hapmap]
rs7861456	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7866641	1.00[CHB][hapmap]
rs7869624	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs7872912	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs9298738	0.89[CHB][hapmap]
rs9298739	0.87[CHB][hapmap]
rs9298740	0.89[CHB][hapmap]
rs9298741	0.89[CHB][hapmap]
rs9406537	1.00[CHB][hapmap]
rs9406542	0.88[CHB][hapmap]
rs9407648	0.88[CHB][hapmap]
rs9407649	0.89[CHB][hapmap]
rs9407650	0.89[CHB][hapmap]
rs9407651	0.89[CHB][hapmap]
rs9407652	0.89[CHB][hapmap]
rs9407654	1.00[CHB][hapmap]
rs9407657	0.89[CHB][hapmap]
rs9407661	0.89[CHB][hapmap]
rs9407662	0.89[CHB][hapmap]
rs9650686	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753625	chr9:15914055-15980320	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
3	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15918200-15930800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:15920000-15936000	Weak transcription	Ovary	ovary
3	chr9:15922800-15930800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:15922800-15931600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:15923000-15929600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr9:15927400-15934800	Weak transcription	HSMM	muscle
7	chr9:15928000-15932600	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links