Variant report

Variant	rs3008678
Chromosome Location	chr9:15937603-15937604
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1080485	0.82[EUR][1000 genomes]
rs1169478	0.81[ASN][1000 genomes]
rs1169479	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1169480	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1328286	0.87[EUR][1000 genomes]
rs1328288	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1359953	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1927696	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2149231	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2225181	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2794634	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2794636	0.83[ASN][1000 genomes]
rs2794645	0.82[EUR][1000 genomes]
rs2794646	0.83[EUR][1000 genomes]
rs2794647	0.82[EUR][1000 genomes]
rs2860316	0.80[ASN][1000 genomes]
rs2987012	0.80[EUR][1000 genomes]
rs2987018	0.80[ASN][1000 genomes]
rs2987069	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2987070	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2987071	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2987072	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3008666	0.81[EUR][1000 genomes]
rs3008672	0.81[EUR][1000 genomes]
rs3008681	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3008686	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3008749	0.80[EUR][1000 genomes]
rs3008753	0.82[EUR][1000 genomes]
rs735962	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs770211	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs770213	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7861456	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9406568	0.82[EUR][1000 genomes]
rs9650686	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753625	chr9:15914055-15980320	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
3	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15930400-15938600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:15933200-15951400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:15934600-15938000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:15934800-15937800	Enhancers	Osteobl	bone
5	chr9:15936400-15939000	Weak transcription	Fetal Kidney	kidney
6	chr9:15936800-15946800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:15937000-15937800	Enhancers	NHDF-Ad	bronchial

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