Variant report

Variant	rs1927696
Chromosome Location	chr9:15929374-15929375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10733305	0.86[JPT][hapmap]
rs10738417	0.95[JPT][hapmap]
rs10738419	0.86[JPT][hapmap]
rs10738420	0.86[JPT][hapmap]
rs10756704	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs10756709	0.87[JPT][hapmap]
rs10756710	0.83[JPT][hapmap]
rs10756711	0.83[JPT][hapmap]
rs10756714	0.91[JPT][hapmap]
rs10756715	0.95[JPT][hapmap]
rs10756720	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs10756721	0.86[ASN][1000 genomes]
rs10756722	0.81[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs10756726	0.86[JPT][hapmap]
rs10756728	0.85[JPT][hapmap]
rs10756729	0.86[JPT][hapmap]
rs10810439	0.85[CHB][hapmap]
rs10810446	0.87[JPT][hapmap]
rs10810455	0.86[JPT][hapmap]
rs10810461	0.95[JPT][hapmap]
rs10810462	0.81[CHB][hapmap]
rs10810479	0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs10810480	0.88[ASN][1000 genomes]
rs10810481	0.88[ASN][1000 genomes]
rs10810482	0.88[ASN][1000 genomes]
rs10810483	0.81[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs10810484	0.80[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs10810485	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs10810486	0.81[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs10810487	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs10810488	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs10810501	0.86[JPT][hapmap]
rs10810502	0.86[JPT][hapmap]
rs10810506	0.86[JPT][hapmap]
rs10810509	0.86[JPT][hapmap]
rs10962142	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs10962151	0.87[JPT][hapmap]
rs10962156	0.87[JPT][hapmap]
rs10962157	0.87[JPT][hapmap]
rs10962158	0.87[JPT][hapmap]
rs10962225	0.81[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs10962227	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs1169478	0.86[CEU][hapmap]
rs1169479	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs1169480	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs12378499	0.87[JPT][hapmap]
rs12379234	0.81[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs1328283	0.81[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1328286	0.89[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1328288	0.86[CEU][hapmap];0.94[EUR][1000 genomes]
rs13287834	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs13292699	0.81[ASN][1000 genomes]
rs13296360	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs13297383	0.80[ASN][1000 genomes]
rs1341732	0.95[JPT][hapmap]
rs1341737	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs1341738	0.87[JPT][hapmap]
rs1359952	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1359953	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1410444	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs1410445	0.84[ASN][1000 genomes]
rs1410446	0.89[ASN][1000 genomes]
rs1539172	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs1539173	0.87[JPT][hapmap]
rs1592099	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs1927697	0.88[ASN][1000 genomes]
rs1927698	0.81[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs2105315	0.87[JPT][hapmap]
rs2182936	0.81[ASN][1000 genomes]
rs2185663	0.87[JPT][hapmap]
rs2225181	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2225182	0.86[JPT][hapmap]
rs2382540	0.87[JPT][hapmap]
rs2794634	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs2794636	0.81[CEU][hapmap]
rs2794645	0.81[EUR][1000 genomes]
rs2794646	0.81[EUR][1000 genomes]
rs2794647	0.81[EUR][1000 genomes]
rs2987009	0.89[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs2987010	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs2987011	0.80[CHB][hapmap];0.90[JPT][hapmap]
rs2987012	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs2987013	0.80[CHB][hapmap];0.90[JPT][hapmap]
rs2987014	0.91[JPT][hapmap]
rs2987069	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs2987070	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs2987071	0.89[EUR][1000 genomes]
rs2987072	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs3008666	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs3008678	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3008681	0.93[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3008686	0.88[EUR][1000 genomes]
rs3008747	0.91[JPT][hapmap]
rs3008748	0.91[JPT][hapmap]
rs3008749	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs3008753	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs4146290	0.87[JPT][hapmap]
rs4146291	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs4146293	0.87[JPT][hapmap]
rs4472620	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs4582646	0.81[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs4740624	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs4740628	0.95[JPT][hapmap]
rs4741545	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs4741546	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs4741548	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs4741552	0.86[JPT][hapmap]
rs4741553	0.86[JPT][hapmap]
rs6474967	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs6474974	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs7043770	0.87[JPT][hapmap]
rs735962	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs770191	0.82[JPT][hapmap]
rs770211	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs770213	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs7849380	0.86[JPT][hapmap]
rs7860528	0.86[JPT][hapmap]
rs7860755	0.87[JPT][hapmap]
rs7873776	0.87[JPT][hapmap]
rs950234	0.86[JPT][hapmap]
rs955369	0.86[JPT][hapmap]
rs961117	0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs9650686	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753625	chr9:15914055-15980320	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
3	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15918200-15930800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:15920000-15936000	Weak transcription	Ovary	ovary
3	chr9:15922800-15930800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:15922800-15931600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:15923000-15929600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr9:15927400-15934800	Weak transcription	HSMM	muscle
7	chr9:15928000-15932600	Weak transcription	NHDF-Ad	bronchial

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