Variant report

Variant	rs3008666
Chromosome Location	chr9:15961571-15961572
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 202 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:199)

rs_ID	r²[population]
rs10733305	0.86[CHB][hapmap]
rs10738417	0.86[JPT][hapmap]
rs10738418	0.86[ASN][1000 genomes]
rs10738419	0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs10738420	0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10738422	0.81[ASN][1000 genomes]
rs10756704	0.95[CHB][hapmap]
rs10756709	0.86[CHB][hapmap]
rs10756710	0.86[CHB][hapmap]
rs10756711	0.86[CHB][hapmap]
rs10756714	0.82[JPT][hapmap]
rs10756715	0.86[JPT][hapmap]
rs10756720	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs10756722	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs10756724	0.81[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs10756725	0.88[ASN][1000 genomes]
rs10756726	0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs10756728	0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs10756729	0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs10756730	0.86[ASN][1000 genomes]
rs10756731	0.86[ASN][1000 genomes]
rs1080484	0.95[YRI][hapmap]
rs1080485	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10810446	0.86[CHB][hapmap]
rs10810455	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs10810461	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs10810462	0.86[CHB][hapmap]
rs10810479	0.81[JPT][hapmap]
rs10810483	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs10810484	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs10810485	0.86[JPT][hapmap]
rs10810486	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs10810487	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs10810488	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs10810501	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs10810502	0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs10810503	0.87[ASN][1000 genomes]
rs10810505	0.88[ASN][1000 genomes]
rs10810506	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs10810507	0.88[ASN][1000 genomes]
rs10810508	0.89[ASN][1000 genomes]
rs10810509	0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs10810510	0.89[ASN][1000 genomes]
rs10810514	0.81[ASN][1000 genomes]
rs10962151	0.86[CHB][hapmap]
rs10962156	0.86[CHB][hapmap]
rs10962157	0.86[CHB][hapmap]
rs10962158	0.86[CHB][hapmap]
rs10962225	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs10962227	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs10962244	0.86[ASN][1000 genomes]
rs1169476	0.90[YRI][hapmap]
rs1169477	0.95[YRI][hapmap]
rs12378499	0.86[CHB][hapmap]
rs12379234	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs1328265	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1328269	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1328271	0.89[EUR][1000 genomes]
rs1328283	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs1328285	0.80[YRI][hapmap]
rs1328286	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs13287834	0.80[CHB][hapmap]
rs13296360	0.95[CHB][hapmap]
rs1341732	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs1341737	0.95[CHB][hapmap]
rs1341738	0.86[CHB][hapmap]
rs1359950	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1359952	0.90[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap]
rs1410444	0.91[JPT][hapmap]
rs1539172	0.95[CHB][hapmap]
rs1539173	0.86[CHB][hapmap]
rs1576171	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1590749	0.86[ASN][1000 genomes]
rs1590750	0.87[ASN][1000 genomes]
rs1592099	0.95[CHB][hapmap]
rs1887664	0.81[ASN][1000 genomes]
rs1927696	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs1927698	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs1927699	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1927700	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1927701	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1927702	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2017943	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2094520	0.81[YRI][hapmap]
rs2094522	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2105315	0.86[CHB][hapmap]
rs2149231	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2182935	0.95[YRI][hapmap]
rs2185663	0.86[CHB][hapmap]
rs2225181	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs2225182	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs2382540	0.86[CHB][hapmap]
rs2382543	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2382544	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2382545	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2382546	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2382547	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2382548	0.88[EUR][1000 genomes]
rs2860316	0.91[EUR][1000 genomes]
rs2891003	0.84[ASN][1000 genomes]
rs2987008	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2987009	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2987010	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2987011	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2987012	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2987013	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2987014	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2987016	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2987017	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2987018	0.91[EUR][1000 genomes]
rs2987019	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2987020	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2987021	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2987022	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2987023	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2987024	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2987025	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2987039	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2987041	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2987042	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2987065	0.90[YRI][hapmap]
rs2987066	0.95[YRI][hapmap]
rs2987069	0.82[EUR][1000 genomes]
rs2987071	0.80[EUR][1000 genomes]
rs2987072	0.81[EUR][1000 genomes]
rs2987079	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2987081	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2987086	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2987090	0.87[EUR][1000 genomes]
rs2987096	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2987098	0.84[EUR][1000 genomes]
rs2987099	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3008672	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3008678	0.81[EUR][1000 genomes]
rs3008681	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap]
rs3008682	0.95[YRI][hapmap]
rs3008710	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3008714	0.89[EUR][1000 genomes]
rs3008715	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3008717	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3008719	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3008723	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3008726	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3008727	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3008728	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3008729	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3008730	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3008732	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3008736	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3008738	0.81[ASN][1000 genomes]
rs3008739	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3008742	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3008744	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3008745	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3008747	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3008748	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3008749	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3008751	0.81[CHB][hapmap]
rs3008753	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3118736	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3124461	0.83[EUR][1000 genomes]
rs4146290	0.86[CHB][hapmap]
rs4146291	0.95[CHB][hapmap]
rs4146293	0.86[CHB][hapmap]
rs4333709	0.80[EUR][1000 genomes]
rs4442245	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4472620	0.86[JPT][hapmap]
rs4475627	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4582646	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs4740628	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs4740629	0.85[ASN][1000 genomes]
rs4741545	0.95[CHB][hapmap]
rs4741546	0.95[CHB][hapmap]
rs4741548	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs4741552	0.90[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4741553	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs6474974	0.95[CHB][hapmap]
rs6474987	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6474988	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6474989	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7023326	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7043770	0.86[CHB][hapmap]
rs723756	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs735962	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs7849380	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs7860528	0.86[CHB][hapmap]
rs7860755	0.86[CHB][hapmap]
rs7873776	0.86[CHB][hapmap]
rs9406568	0.87[EUR][1000 genomes]
rs9406569	0.88[EUR][1000 genomes]
rs9406581	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9407697	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9407702	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs955369	0.85[CHB][hapmap]
rs961117	0.86[JPT][hapmap]
rs9969685	0.89[ASN][1000 genomes]
rs9969791	0.81[CHB][hapmap];0.89[ASN][1000 genomes]
rs9969816	0.88[ASN][1000 genomes]
rs9969817	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753625	chr9:15914055-15980320	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
3	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15952600-15987600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:15955800-15972600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:15958400-15972200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:15959800-15961600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:15960600-15961600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:15960600-15961600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr9:15960800-15961600	Enhancers	Adipose Nuclei	Adipose
8	chr9:15960800-15961600	Enhancers	HSMM	muscle
9	chr9:15961400-15961600	Enhancers	Osteobl	bone

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