Variant report

Variant	rs12379234
Chromosome Location	chr9:15932372-15932373
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10283865	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs10738417	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs10738418	0.81[EUR][1000 genomes]
rs10738419	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10738420	0.84[CEU][hapmap];0.91[JPT][hapmap]
rs10756704	0.84[CHB][hapmap]
rs10756714	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs10756715	0.85[CHB][hapmap];0.91[JPT][hapmap];0.81[AFR][1000 genomes]
rs10756717	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10756720	0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10756721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10756722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10756724	0.95[CEU][hapmap];0.80[CHB][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10756725	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10756726	0.91[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs10756728	0.80[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs10756729	0.80[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs10756730	0.80[EUR][1000 genomes]
rs10810439	0.84[CHB][hapmap]
rs10810461	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs10810462	0.95[CHB][hapmap];0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10810471	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10810473	0.84[EUR][1000 genomes]
rs10810474	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10810475	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10810479	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10810480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10810481	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10810482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10810483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10810485	0.92[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10810486	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10810487	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10810488	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10810494	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10810501	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs10810502	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810503	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10810505	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810506	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810507	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810508	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10810509	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10810510	0.80[EUR][1000 genomes]
rs10962142	0.84[CHB][hapmap]
rs10962212	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10962215	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10962225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10962227	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1328283	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1328286	0.84[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs13292699	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13296360	0.84[CHB][hapmap]
rs13297383	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1341732	0.95[CHB][hapmap];0.84[JPT][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1341737	0.84[CHB][hapmap]
rs1359952	0.90[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs1410444	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1410445	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1410446	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1539172	0.84[CHB][hapmap]
rs1590749	0.81[EUR][1000 genomes]
rs1590750	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1592099	0.84[CHB][hapmap]
rs1891211	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs1891212	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs1927696	0.81[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs1927697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182936	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2225181	0.90[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs2225182	0.91[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2382554	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2987009	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs2987010	0.86[JPT][hapmap]
rs2987011	0.86[JPT][hapmap]
rs2987012	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs2987013	0.86[JPT][hapmap]
rs2987014	0.87[JPT][hapmap]
rs3008666	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs3008681	0.90[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs3008747	0.87[JPT][hapmap]
rs3008748	0.87[JPT][hapmap]
rs3008749	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs3008753	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs35703971	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4146291	0.84[CHB][hapmap]
rs4472620	0.92[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.87[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4582646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4740624	0.84[CHB][hapmap]
rs4740628	0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[AFR][1000 genomes]
rs4741545	0.84[CHB][hapmap]
rs4741546	0.84[CHB][hapmap]
rs4741548	0.88[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4741550	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4741552	0.82[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs4741553	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs4961433	0.82[EUR][1000 genomes]
rs4961526	0.84[EUR][1000 genomes]
rs6474967	0.84[CHB][hapmap]
rs6474974	0.83[CHB][hapmap]
rs7027202	0.80[CEU][hapmap]
rs735962	0.90[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs769151	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs961117	0.92[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.87[AFR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9969685	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9969791	0.96[CEU][hapmap];0.81[CHB][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9969816	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9969817	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753625	chr9:15914055-15980320	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
3	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15920000-15936000	Weak transcription	Ovary	ovary
2	chr9:15927400-15934800	Weak transcription	HSMM	muscle
3	chr9:15928000-15932600	Weak transcription	NHDF-Ad	bronchial
4	chr9:15930400-15938600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:15930800-15933200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:15931600-15933200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin

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