Variant report

Variant	rs2382554
Chromosome Location	chr9:15897372-15897373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10283865	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10732335	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10733305	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10738417	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10756713	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10756714	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10756715	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10756717	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10756720	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10756721	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10756722	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810455	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10810461	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10810462	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10810471	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10810473	0.89[EUR][1000 genomes]
rs10810474	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10810475	0.94[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10810479	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810480	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810481	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810482	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810483	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10810484	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810485	0.93[AFR][1000 genomes]
rs10810486	0.93[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10810487	0.93[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10810488	0.93[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10962212	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10962215	0.94[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10962225	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10962227	0.83[ASN][1000 genomes]
rs11515071	0.87[AFR][1000 genomes]
rs11562188	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12379234	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1328283	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1328286	0.80[ASN][1000 genomes]
rs13292699	0.94[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13297383	0.93[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1341732	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1410444	0.93[AFR][1000 genomes]
rs1410445	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1410446	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1891211	0.95[EUR][1000 genomes]
rs1891212	0.95[EUR][1000 genomes]
rs1927697	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1927698	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1984246	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2182936	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4472620	0.93[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4582646	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4740627	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4740628	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4741545	0.81[AFR][1000 genomes]
rs4741546	0.87[AFR][1000 genomes]
rs4741548	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4741550	0.86[AFR][1000 genomes]
rs4961713	0.85[ASN][1000 genomes]
rs7027202	0.95[EUR][1000 genomes]
rs961117	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15877000-15903400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:15893200-15897800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:15893400-15897800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr9:15893400-15897800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:15897200-15902000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links