Variant report

Variant	rs13292699
Chromosome Location	chr9:15910044-15910045
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10283865	0.89[EUR][1000 genomes]
rs10732335	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10733305	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10738417	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10756713	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10756714	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10756715	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10756717	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10756720	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10756721	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10756722	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10756730	0.80[AMR][1000 genomes]
rs10810455	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10810461	0.84[ASN][1000 genomes]
rs10810462	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10810471	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810473	0.92[EUR][1000 genomes]
rs10810474	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10810475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10810479	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10810480	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10810481	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10810482	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10810483	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10810484	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10810485	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10810486	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810487	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10810488	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10962212	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10962215	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10962225	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10962227	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11515071	0.81[AFR][1000 genomes]
rs11562188	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12379234	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1328283	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1328286	0.81[ASN][1000 genomes]
rs13297383	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1341732	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1359952	0.83[ASN][1000 genomes]
rs1410444	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1410445	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1410446	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1891211	0.91[EUR][1000 genomes]
rs1891212	0.91[EUR][1000 genomes]
rs1927696	0.81[ASN][1000 genomes]
rs1927697	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1927698	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1984246	0.89[EUR][1000 genomes]
rs2182936	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2225181	0.84[ASN][1000 genomes]
rs2382554	0.94[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3008681	0.82[ASN][1000 genomes]
rs4472620	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4582646	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4740627	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4740628	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4741546	0.81[AFR][1000 genomes]
rs4741548	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4741550	0.81[AFR][1000 genomes]
rs7027202	0.89[EUR][1000 genomes]
rs735962	0.83[ASN][1000 genomes]
rs961117	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15902000-15914200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:15908800-15910200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr9:15908800-15910200	Enhancers	HSMM	muscle
4	chr9:15909000-15910200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:15909200-15910200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:15909200-15910400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:15909800-15910200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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