Variant report

Variant	rs10810481
Chromosome Location	chr9:15930623-15930624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10283865	0.80[EUR][1000 genomes]
rs10738418	0.81[EUR][1000 genomes]
rs10738419	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10756717	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10756720	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10756721	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10756722	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10756724	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10756725	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10756726	0.82[EUR][1000 genomes]
rs10756730	0.80[EUR][1000 genomes]
rs10810462	0.81[EUR][1000 genomes]
rs10810471	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10810473	0.84[EUR][1000 genomes]
rs10810474	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10810475	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10810479	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810480	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810482	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810483	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10810484	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810485	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10810486	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10810487	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10810488	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10810494	0.86[EUR][1000 genomes]
rs10810501	0.81[ASN][1000 genomes]
rs10810502	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10810503	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810505	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10810506	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10810507	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10810508	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10810509	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10810510	0.80[EUR][1000 genomes]
rs10962212	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10962215	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10962225	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10962227	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12379234	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1328283	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1328286	0.81[ASN][1000 genomes]
rs13292699	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13297383	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1341732	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1359952	0.89[ASN][1000 genomes]
rs1410444	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1410445	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1410446	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1590749	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1590750	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1891211	0.82[EUR][1000 genomes]
rs1891212	0.82[EUR][1000 genomes]
rs1927696	0.88[ASN][1000 genomes]
rs1927697	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1927698	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2182936	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2225181	0.88[ASN][1000 genomes]
rs2225182	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2382554	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3008681	0.91[ASN][1000 genomes]
rs35703971	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4472620	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4582646	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4741548	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4741550	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4961433	0.82[EUR][1000 genomes]
rs4961526	0.84[EUR][1000 genomes]
rs735962	0.90[ASN][1000 genomes]
rs769151	0.86[EUR][1000 genomes]
rs961117	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9969685	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9969791	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9969816	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9969817	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753625	chr9:15914055-15980320	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
3	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15918200-15930800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:15920000-15936000	Weak transcription	Ovary	ovary
3	chr9:15922800-15930800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:15922800-15931600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:15927400-15934800	Weak transcription	HSMM	muscle
6	chr9:15928000-15932600	Weak transcription	NHDF-Ad	bronchial
7	chr9:15930400-15938600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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