Variant report

Variant	rs10810471
Chromosome Location	chr9:15906776-15906777
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10283865	0.87[EUR][1000 genomes]
rs10756715	0.81[EUR][1000 genomes]
rs10756717	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10756720	0.84[EUR][1000 genomes]
rs10756721	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10756722	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10810462	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10810473	0.89[EUR][1000 genomes]
rs10810474	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10810475	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10810479	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10810480	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10810481	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10810482	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10810483	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10810484	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10810485	0.80[EUR][1000 genomes]
rs10810486	0.81[EUR][1000 genomes]
rs10810487	0.81[EUR][1000 genomes]
rs10810488	0.81[EUR][1000 genomes]
rs10962212	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10962215	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10962225	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10962227	0.81[EUR][1000 genomes]
rs12379234	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1328283	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13292699	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13297383	0.81[EUR][1000 genomes]
rs1341732	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1410444	0.80[EUR][1000 genomes]
rs1410445	0.84[EUR][1000 genomes]
rs1410446	0.84[EUR][1000 genomes]
rs1891211	0.89[EUR][1000 genomes]
rs1891212	0.89[EUR][1000 genomes]
rs1927697	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1927698	0.83[EUR][1000 genomes]
rs1984246	0.87[EUR][1000 genomes]
rs2182936	0.84[EUR][1000 genomes]
rs2382554	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4472620	0.81[EUR][1000 genomes]
rs4582646	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4740628	0.85[EUR][1000 genomes]
rs4741548	0.85[EUR][1000 genomes]
rs7027202	0.87[EUR][1000 genomes]
rs961117	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15902000-15914200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links