Variant report

Variant	rs2182936
Chromosome Location	chr9:15918922-15918923
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10283865	0.80[EUR][1000 genomes]
rs10732335	0.81[AMR][1000 genomes]
rs10733305	0.82[AMR][1000 genomes]
rs10738417	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10738418	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10738419	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10738420	0.81[EUR][1000 genomes]
rs10738421	0.82[AMR][1000 genomes]
rs10756713	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10756714	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10756715	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10756717	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10756720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10756721	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10756722	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10756724	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10756725	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10756726	0.82[EUR][1000 genomes]
rs10756730	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10810455	0.82[AMR][1000 genomes]
rs10810461	0.83[ASN][1000 genomes]
rs10810462	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10810471	0.84[EUR][1000 genomes]
rs10810473	0.84[EUR][1000 genomes]
rs10810474	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10810475	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10810479	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10810480	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10810481	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10810482	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10810483	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10810484	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10810485	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10810486	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10810487	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10810488	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10810494	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10810501	0.82[ASN][1000 genomes]
rs10810502	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810503	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10810505	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810506	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810507	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810508	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10810509	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10810510	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10962212	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10962215	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10962225	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10962227	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11562188	0.81[AMR][1000 genomes]
rs12379234	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1328283	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1328286	0.91[ASN][1000 genomes]
rs13292699	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13297383	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1341732	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1359952	0.83[ASN][1000 genomes]
rs1410444	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1410445	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1410446	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1590749	0.80[EUR][1000 genomes]
rs1590750	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1891211	0.82[EUR][1000 genomes]
rs1891212	0.82[EUR][1000 genomes]
rs1927696	0.81[ASN][1000 genomes]
rs1927697	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1927698	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2225181	0.84[ASN][1000 genomes]
rs2225182	0.82[ASN][1000 genomes]
rs2382554	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3008681	0.82[ASN][1000 genomes]
rs35703971	0.84[EUR][1000 genomes]
rs4472620	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4582646	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4740627	0.81[AMR][1000 genomes]
rs4740628	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4741548	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4741550	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4961433	0.82[EUR][1000 genomes]
rs4961526	0.80[EUR][1000 genomes]
rs735962	0.82[ASN][1000 genomes]
rs769151	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs961117	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9969685	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9969791	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9969816	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9969817	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753625	chr9:15914055-15980320	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15915800-15920800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:15916000-15920600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:15918200-15930800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links