Variant report

Variant	rs10733305
Chromosome Location	chr9:15866759-15866760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 178 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:165)

rs_ID	r²[population]
rs1009468	0.81[JPT][hapmap]
rs10283865	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs10732335	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10733295	0.89[CEU][hapmap]
rs10733302	0.81[AMR][1000 genomes]
rs10738411	0.81[AMR][1000 genomes]
rs10738417	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10738419	0.86[CHB][hapmap]
rs10738420	0.85[CHB][hapmap]
rs10756690	1.00[CEU][hapmap]
rs10756696	0.82[AMR][1000 genomes]
rs10756697	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes]
rs10756704	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs10756709	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10756710	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10756711	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10756713	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10756714	0.96[CEU][hapmap];0.91[CHB][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10756715	0.81[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10756720	0.90[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes]
rs10756726	0.86[CHB][hapmap]
rs10756728	0.86[CHB][hapmap]
rs10756729	0.86[CHB][hapmap]
rs10810426	0.83[CEU][hapmap]
rs10810427	0.83[CEU][hapmap]
rs10810428	1.00[CEU][hapmap]
rs10810429	0.83[CEU][hapmap]
rs10810435	0.81[AMR][1000 genomes]
rs10810436	0.83[AMR][1000 genomes]
rs10810438	0.83[CEU][hapmap]
rs10810439	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10810440	0.85[CEU][hapmap]
rs10810442	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs10810446	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10810451	0.82[EUR][1000 genomes]
rs10810455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10810461	0.92[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10810462	0.82[CHB][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10810474	0.81[AFR][1000 genomes]
rs10810475	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10810484	0.85[CHB][hapmap]
rs10810485	0.85[CHB][hapmap]
rs10810486	0.82[CHB][hapmap]
rs10810487	0.82[CHB][hapmap]
rs10810488	0.90[CHB][hapmap]
rs10810502	0.86[CHB][hapmap]
rs10810509	0.86[CHB][hapmap]
rs10962126	0.89[CEU][hapmap]
rs10962142	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs10962149	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs10962151	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10962156	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10962157	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10962158	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs10962163	0.82[EUR][1000 genomes]
rs10962167	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10962212	0.81[AFR][1000 genomes]
rs10962215	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10962227	0.82[CHB][hapmap]
rs11515071	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11562188	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12057012	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12341679	0.85[CEU][hapmap]
rs12377371	0.83[CEU][hapmap]
rs12378499	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12552653	0.82[EUR][1000 genomes]
rs12553816	0.81[AMR][1000 genomes]
rs1328283	0.82[JPT][hapmap]
rs1328286	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs13287834	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs13292699	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs13296360	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1341732	0.80[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1341737	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1341738	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1355171	0.89[CEU][hapmap]
rs1359952	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs1396706	0.80[CEU][hapmap]
rs1396707	0.96[CEU][hapmap]
rs1396708	0.96[CEU][hapmap];0.95[CHB][hapmap]
rs1410444	0.85[CHB][hapmap]
rs1539172	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1539173	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1553728	0.96[CEU][hapmap]
rs1592099	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1891211	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs1891212	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs1927696	0.86[JPT][hapmap]
rs1984246	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs2105315	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs2105317	0.93[CEU][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs2105318	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2105319	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2153727	0.81[JPT][hapmap]
rs2175080	0.85[CEU][hapmap]
rs2182936	0.82[AMR][1000 genomes]
rs2185663	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2211323	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2225181	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs2382534	0.96[CEU][hapmap]
rs2382540	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2382554	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2987009	0.86[CHB][hapmap]
rs2987010	0.90[CHB][hapmap]
rs2987011	0.95[CHB][hapmap]
rs2987012	0.86[CHB][hapmap]
rs2987013	0.95[CHB][hapmap]
rs2987014	0.85[CHB][hapmap]
rs3008666	0.86[CHB][hapmap]
rs3008681	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs3008747	0.95[CHB][hapmap]
rs3008748	0.95[CHB][hapmap]
rs3008749	0.86[CHB][hapmap]
rs3008751	0.85[CHB][hapmap]
rs3008753	0.86[CHB][hapmap]
rs4146290	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs4146291	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4146293	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4472620	0.85[CHB][hapmap]
rs4740624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4740627	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4740628	0.82[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4741534	0.96[CEU][hapmap]
rs4741535	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes]
rs4741545	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4741546	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4741548	0.82[JPT][hapmap]
rs4741552	0.86[CHB][hapmap]
rs4961713	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6474944	1.00[CEU][hapmap]
rs6474945	1.00[CEU][hapmap]
rs6474952	0.85[CEU][hapmap]
rs6474954	0.96[CEU][hapmap]
rs6474966	0.89[CEU][hapmap]
rs6474967	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6474974	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7024640	0.96[CEU][hapmap]
rs7027202	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs7034781	0.85[CEU][hapmap]
rs7035863	0.86[CEU][hapmap]
rs7043770	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7045018	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs735962	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs7466716	0.85[EUR][1000 genomes]
rs7467156	0.83[CEU][hapmap]
rs7467207	0.85[CEU][hapmap]
rs7847144	0.96[CEU][hapmap]
rs7849380	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7853744	0.81[JPT][hapmap]
rs7860528	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7860755	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs7860869	0.83[CEU][hapmap]
rs7866641	0.81[JPT][hapmap]
rs7873776	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs9298739	0.83[JPT][hapmap]
rs9298740	0.80[CEU][hapmap]
rs9298741	0.80[CEU][hapmap]
rs9406537	0.80[JPT][hapmap]
rs9407654	0.81[JPT][hapmap]
rs950234	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs954663	0.83[CEU][hapmap]
rs955369	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs961117	0.85[CHB][hapmap];0.81[AMR][1000 genomes]
rs9650685	0.80[AMR][1000 genomes]
rs9886731	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv892636	chr9:15794858-15876507	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv613666	chr9:15823667-15875162	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv613667	chr9:15823667-15876507	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1016226	chr9:15841107-15875321	ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1015435	chr9:15841107-15880385	Enhancers ZNF genes & repeats Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1032081	chr9:15845902-15878115	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1027790	chr9:15845902-15878841	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15849000-15873800	Weak transcription	Fetal Lung	lung
2	chr9:15857800-15885400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:15863600-15878200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:15866000-15867000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:15866600-15868800	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links