Variant report

Variant	rs4961713
Chromosome Location	chr9:15868769-15868770
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10732335	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10733301	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10733302	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10733305	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10738411	0.85[AMR][1000 genomes]
rs10738413	0.82[EUR][1000 genomes]
rs10738417	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10756692	0.82[AMR][1000 genomes]
rs10756696	0.84[AMR][1000 genomes]
rs10756697	0.85[AMR][1000 genomes]
rs10756703	0.81[EUR][1000 genomes]
rs10756704	0.85[EUR][1000 genomes]
rs10756709	0.85[ASN][1000 genomes]
rs10756710	0.84[ASN][1000 genomes]
rs10756711	0.83[ASN][1000 genomes]
rs10756713	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10756714	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10756715	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10810435	0.83[AMR][1000 genomes]
rs10810436	0.85[AMR][1000 genomes]
rs10810439	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10810442	0.82[EUR][1000 genomes]
rs10810450	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10810451	0.84[EUR][1000 genomes]
rs10810452	0.81[AMR][1000 genomes]
rs10810455	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10810461	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10810462	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10962142	0.83[AMR][1000 genomes]
rs10962149	0.85[EUR][1000 genomes]
rs10962151	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10962157	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10962158	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10962163	0.84[EUR][1000 genomes]
rs10962167	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10962215	0.80[AMR][1000 genomes]
rs11515071	0.90[ASN][1000 genomes]
rs11562188	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12057012	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12552653	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12553816	0.85[AMR][1000 genomes]
rs1328286	0.81[ASN][1000 genomes]
rs1341732	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1396708	0.81[AMR][1000 genomes]
rs1592099	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2105315	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2105317	0.84[EUR][1000 genomes]
rs2105318	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2105319	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2211323	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2382554	0.85[ASN][1000 genomes]
rs4146290	0.85[EUR][1000 genomes]
rs4146291	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4740624	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4740627	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4740628	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4741535	0.81[AMR][1000 genomes]
rs4741542	0.81[EUR][1000 genomes]
rs4741545	0.88[AMR][1000 genomes]
rs4741546	0.83[ASN][1000 genomes]
rs6474974	0.84[EUR][1000 genomes]
rs7045018	0.85[EUR][1000 genomes]
rs7466716	0.87[EUR][1000 genomes]
rs7466717	0.80[EUR][1000 genomes]
rs7860755	0.82[EUR][1000 genomes]
rs7873776	0.85[EUR][1000 genomes]
rs950234	0.84[AMR][1000 genomes]
rs955369	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9650685	0.84[AMR][1000 genomes]
rs9886731	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv892636	chr9:15794858-15876507	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv613666	chr9:15823667-15875162	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv613667	chr9:15823667-15876507	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1016226	chr9:15841107-15875321	ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1015435	chr9:15841107-15880385	Enhancers ZNF genes & repeats Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1032081	chr9:15845902-15878115	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1027790	chr9:15845902-15878841	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15849000-15873800	Weak transcription	Fetal Lung	lung
2	chr9:15857800-15885400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:15863600-15878200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:15866600-15868800	Enhancers	Fetal Heart	heart
5	chr9:15867000-15874400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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