Variant report

Variant	rs10756713
Chromosome Location	chr9:15880555-15880556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SNAPC3-6	chr9:15878981-15880761	ucscGeneNc_uc003zmg_2

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10732335	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10733305	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10738417	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10756697	0.80[AMR][1000 genomes]
rs10756714	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10756715	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10756717	0.80[ASN][1000 genomes]
rs10756720	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10810436	0.80[AMR][1000 genomes]
rs10810439	0.80[EUR][1000 genomes]
rs10810455	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10810461	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10810462	0.94[AFR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10810474	0.88[AFR][1000 genomes]
rs10810475	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10810485	0.87[AFR][1000 genomes]
rs10810486	0.87[AFR][1000 genomes]
rs10810487	0.87[AFR][1000 genomes]
rs10810488	0.87[AFR][1000 genomes]
rs10962149	0.80[EUR][1000 genomes]
rs10962151	0.82[EUR][1000 genomes]
rs10962163	0.80[EUR][1000 genomes]
rs10962212	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10962215	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11515071	0.94[AFR][1000 genomes]
rs11562188	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12553816	0.80[AMR][1000 genomes]
rs13292699	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13297383	0.87[AFR][1000 genomes]
rs1341732	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1410444	0.87[AFR][1000 genomes]
rs1984246	0.80[EUR][1000 genomes]
rs2105319	0.82[EUR][1000 genomes]
rs2182936	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2211323	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2382554	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4146291	0.80[EUR][1000 genomes]
rs4472620	0.87[AFR][1000 genomes]
rs4740624	0.80[EUR][1000 genomes]
rs4740627	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4740628	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4741545	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4741546	0.94[AFR][1000 genomes]
rs4741550	0.81[AFR][1000 genomes]
rs4961713	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7027202	0.80[EUR][1000 genomes]
rs7045018	0.80[EUR][1000 genomes]
rs7466716	0.82[EUR][1000 genomes]
rs7873776	0.82[EUR][1000 genomes]
rs961117	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9886731	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15857800-15885400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:15877000-15903400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:15877400-15885800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:15877600-15888400	Weak transcription	Pancreas	Pancrea
5	chr9:15879000-15885400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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