Variant report

Variant	rs10756703
Chromosome Location	chr9:15779398-15779399
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15778842..15781676-chr9:15783903..15785972,2	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10733301	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10733302	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10738411	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10738413	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10756692	0.81[AMR][1000 genomes]
rs10756696	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10756697	0.88[AMR][1000 genomes]
rs10756704	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10810435	0.86[AMR][1000 genomes]
rs10810436	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10810439	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10810442	0.87[EUR][1000 genomes]
rs10810446	0.89[ASN][1000 genomes]
rs10810448	0.84[EUR][1000 genomes]
rs10810450	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10810451	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10962142	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10962149	0.90[EUR][1000 genomes]
rs10962151	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10962156	0.90[ASN][1000 genomes]
rs10962157	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10962158	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10962162	0.81[AMR][1000 genomes]
rs10962163	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10962167	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11515218	0.83[ASN][1000 genomes]
rs11521158	0.84[ASN][1000 genomes]
rs11562188	0.81[EUR][1000 genomes]
rs12057012	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12346205	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12349973	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12552653	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12553816	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13287834	0.91[ASN][1000 genomes]
rs13296276	0.88[ASN][1000 genomes]
rs1509310	0.81[EUR][1000 genomes]
rs1539172	0.89[ASN][1000 genomes]
rs1539173	0.89[ASN][1000 genomes]
rs1592099	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2105315	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2105317	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2105318	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2105319	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2185663	0.88[ASN][1000 genomes]
rs2211323	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2382540	0.89[ASN][1000 genomes]
rs2891002	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34512145	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4146290	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4146291	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4740624	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4740625	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4740626	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4740627	0.81[EUR][1000 genomes]
rs4741535	0.86[AMR][1000 genomes]
rs4741542	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4961713	0.81[EUR][1000 genomes]
rs6474966	0.82[EUR][1000 genomes]
rs6474967	0.84[ASN][1000 genomes]
rs6474974	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7043770	0.88[ASN][1000 genomes]
rs7045018	0.90[EUR][1000 genomes]
rs7466716	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7466717	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7846970	0.85[ASN][1000 genomes]
rs7859718	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7860528	0.85[ASN][1000 genomes]
rs7860755	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7860992	0.85[ASN][1000 genomes]
rs7861802	0.89[ASN][1000 genomes]
rs7873776	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs950234	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs955369	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9650685	0.81[AMR][1000 genomes]
rs9886731	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15756200-15790800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:15759200-15784400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:15774600-15781800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:15775800-15786600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr9:15777000-15810600	Weak transcription	Pancreas	Pancrea
6	chr9:15778200-15782600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:15779000-15791200	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links