Variant report

Variant	rs1509310
Chromosome Location	chr9:15733836-15733837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15732005..15734234-chr9:15736903..15738825,2	K562	blood:

Extended variants
information (count: 208 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:200)

rs_ID	r²[population]
rs10119975	0.82[EUR][1000 genomes]
rs10122339	0.80[EUR][1000 genomes]
rs1039813	0.81[EUR][1000 genomes]
rs1039814	0.81[EUR][1000 genomes]
rs10481557	0.82[EUR][1000 genomes]
rs10733301	0.80[EUR][1000 genomes]
rs10733302	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10738402	0.82[EUR][1000 genomes]
rs10738403	0.91[EUR][1000 genomes]
rs10738404	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10738405	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10738406	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10738411	0.80[AMR][1000 genomes]
rs10738413	0.82[AMR][1000 genomes]
rs10756676	0.81[EUR][1000 genomes]
rs10756677	0.82[EUR][1000 genomes]
rs10756678	0.82[EUR][1000 genomes]
rs10756679	0.84[EUR][1000 genomes]
rs10756680	0.86[EUR][1000 genomes]
rs10756686	0.82[EUR][1000 genomes]
rs10756687	0.87[EUR][1000 genomes]
rs10756688	0.87[EUR][1000 genomes]
rs10756689	0.87[EUR][1000 genomes]
rs10756690	0.92[EUR][1000 genomes]
rs10756691	0.81[EUR][1000 genomes]
rs10756692	0.93[EUR][1000 genomes]
rs10756693	0.94[EUR][1000 genomes]
rs10756694	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10756695	0.95[EUR][1000 genomes]
rs10756696	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10756697	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10756703	0.81[EUR][1000 genomes]
rs10756704	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10810401	0.81[EUR][1000 genomes]
rs10810408	0.82[EUR][1000 genomes]
rs10810409	0.86[EUR][1000 genomes]
rs10810428	0.93[EUR][1000 genomes]
rs10810429	0.83[EUR][1000 genomes]
rs10810430	0.83[EUR][1000 genomes]
rs10810431	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10810432	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10810433	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10810434	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10810435	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10810436	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10810438	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10810439	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10810440	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10810442	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10810451	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10962066	0.80[EUR][1000 genomes]
rs10962098	0.83[EUR][1000 genomes]
rs10962099	0.83[EUR][1000 genomes]
rs10962110	0.86[EUR][1000 genomes]
rs10962121	0.83[EUR][1000 genomes]
rs10962123	0.83[EUR][1000 genomes]
rs10962124	0.96[EUR][1000 genomes]
rs10962125	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10962126	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10962142	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10962146	0.83[AMR][1000 genomes]
rs10962147	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10962149	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10962151	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10962152	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10962153	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10962157	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10962158	0.82[EUR][1000 genomes]
rs10962163	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10962167	0.81[EUR][1000 genomes]
rs11789538	0.92[EUR][1000 genomes]
rs11789563	0.97[EUR][1000 genomes]
rs11791627	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11793900	0.85[EUR][1000 genomes]
rs12004358	0.83[EUR][1000 genomes]
rs12057012	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12340969	0.86[EUR][1000 genomes]
rs12341679	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12349323	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12349973	0.87[AMR][1000 genomes]
rs12352779	0.82[EUR][1000 genomes]
rs12377371	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12552653	0.81[EUR][1000 genomes]
rs12553816	0.80[AMR][1000 genomes]
rs13283620	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13291638	0.85[EUR][1000 genomes]
rs1341734	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1355173	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1396706	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1396707	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1396708	0.95[EUR][1000 genomes]
rs1533040	0.87[EUR][1000 genomes]
rs1539171	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1553728	0.90[EUR][1000 genomes]
rs1592099	0.80[EUR][1000 genomes]
rs1812686	0.82[EUR][1000 genomes]
rs1970497	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2055772	0.83[EUR][1000 genomes]
rs2096121	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2105315	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2105317	0.84[AMR][1000 genomes]
rs2105318	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2105319	0.84[EUR][1000 genomes]
rs2136355	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2175080	0.83[EUR][1000 genomes]
rs2175082	0.83[EUR][1000 genomes]
rs2211323	0.83[EUR][1000 genomes]
rs2382532	0.89[EUR][1000 genomes]
rs2382534	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2382538	0.82[EUR][1000 genomes]
rs28410434	0.82[EUR][1000 genomes]
rs2891007	0.80[AMR][1000 genomes]
rs34700988	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35057009	0.83[EUR][1000 genomes]
rs35146544	0.90[EUR][1000 genomes]
rs36013000	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs36086644	0.82[EUR][1000 genomes]
rs4146290	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4146291	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4339736	0.93[EUR][1000 genomes]
rs4448380	0.81[EUR][1000 genomes]
rs4740615	0.81[EUR][1000 genomes]
rs4740618	0.82[EUR][1000 genomes]
rs4740619	0.86[EUR][1000 genomes]
rs4740620	0.87[EUR][1000 genomes]
rs4740621	0.82[EUR][1000 genomes]
rs4740622	0.85[EUR][1000 genomes]
rs4740624	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4741515	0.81[EUR][1000 genomes]
rs4741517	0.82[EUR][1000 genomes]
rs4741519	0.86[EUR][1000 genomes]
rs4741520	0.82[EUR][1000 genomes]
rs4741528	0.87[EUR][1000 genomes]
rs4741529	0.86[EUR][1000 genomes]
rs4741534	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4741535	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4741542	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs58517712	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62571268	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62573118	0.83[EUR][1000 genomes]
rs6474942	0.90[EUR][1000 genomes]
rs6474944	0.90[EUR][1000 genomes]
rs6474945	0.91[EUR][1000 genomes]
rs6474951	0.83[EUR][1000 genomes]
rs6474952	0.83[EUR][1000 genomes]
rs6474953	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6474954	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6474955	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6474962	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6474963	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6474964	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6474965	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6474966	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6474974	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7018872	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7019143	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7019323	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7019430	0.92[EUR][1000 genomes]
rs7019851	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7024640	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7025420	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7025669	0.87[EUR][1000 genomes]
rs7028999	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7032755	0.82[EUR][1000 genomes]
rs7032877	0.83[EUR][1000 genomes]
rs7033236	0.91[EUR][1000 genomes]
rs7034781	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7036172	0.87[EUR][1000 genomes]
rs7036285	0.82[EUR][1000 genomes]
rs7036674	0.87[EUR][1000 genomes]
rs7036775	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7037662	0.83[EUR][1000 genomes]
rs7037908	0.82[EUR][1000 genomes]
rs7044122	0.81[EUR][1000 genomes]
rs7045018	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7049101	0.82[EUR][1000 genomes]
rs7049176	0.92[EUR][1000 genomes]
rs7389047	0.84[EUR][1000 genomes]
rs7466716	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7467207	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7847144	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7854714	0.92[EUR][1000 genomes]
rs7855235	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7859780	0.86[EUR][1000 genomes]
rs7860024	0.96[ASN][1000 genomes]
rs7860755	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7860869	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7861004	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7863088	0.86[EUR][1000 genomes]
rs7868779	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7869624	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7872912	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7873776	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7874533	0.81[EUR][1000 genomes]
rs950234	0.81[AMR][1000 genomes]
rs954663	0.81[EUR][1000 genomes]
rs954664	0.81[EUR][1000 genomes]
rs955369	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9696751	0.81[EUR][1000 genomes]
rs9886731	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv892634	chr9:15696501-15746168	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv32957	chr9:15720059-15737099	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15679800-15746800	Weak transcription	Ovary	ovary
2	chr9:15687600-15746600	Weak transcription	Aorta	Aorta
3	chr9:15715200-15746200	Weak transcription	Left Ventricle	heart
4	chr9:15718000-15749600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr9:15718600-15746600	Weak transcription	Thymus	Thymus
6	chr9:15720600-15735200	Weak transcription	Adipose Nuclei	Adipose
7	chr9:15725400-15734600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr9:15729000-15746800	Weak transcription	Fetal Thymus	thymus
9	chr9:15732000-15734000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr9:15732000-15735200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr9:15732600-15734400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:15732800-15735200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:15733200-15739000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:15733400-15734800	Weak transcription	Hela-S3	cervix

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