Variant report

Variant	rs6474963
Chromosome Location	chr9:15747856-15747857
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10118359	0.82[EUR][1000 genomes]
rs10119975	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10121393	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10121591	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10122339	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10733295	0.80[EUR][1000 genomes]
rs10756691	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10810424	0.82[EUR][1000 genomes]
rs10810426	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10810427	0.80[EUR][1000 genomes]
rs10810429	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10810430	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10810438	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10810440	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10810442	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10810446	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10962118	0.82[AMR][1000 genomes]
rs10962121	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10962123	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10962125	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10962126	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10962146	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10962147	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10962149	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10962152	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10962153	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10962156	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11515218	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11521158	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11793900	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12004358	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12341679	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12349323	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12352779	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12377371	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13283620	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13287834	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13295778	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13296276	0.91[EUR][1000 genomes]
rs13302398	0.81[AFR][1000 genomes]
rs1341734	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1341735	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1355171	0.81[EUR][1000 genomes]
rs1355173	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1396706	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1509310	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1539171	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1539172	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1539173	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1970497	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2096121	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2175080	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2185663	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2382540	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28403566	0.86[AMR][1000 genomes]
rs28410434	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28785887	0.84[AMR][1000 genomes]
rs34700988	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35057009	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36013000	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36086644	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58517712	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62571268	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62573118	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6474946	0.82[EUR][1000 genomes]
rs6474951	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6474952	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6474962	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6474964	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6474965	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6474966	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6474967	0.88[EUR][1000 genomes]
rs7018872	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7019143	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7019323	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7019851	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7025420	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7028999	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7030846	0.81[EUR][1000 genomes]
rs7034484	0.81[EUR][1000 genomes]
rs7034781	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7036285	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7036775	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7037662	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7037908	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7043770	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7045018	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7467207	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7846970	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7848511	0.81[EUR][1000 genomes]
rs7860024	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7860528	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7860869	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7860992	0.82[EUR][1000 genomes]
rs7861802	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7869624	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7872912	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs954663	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs954664	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15718000-15749600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr9:15737000-15754000	Weak transcription	Gastric	stomach
3	chr9:15742600-15769600	Weak transcription	Psoas Muscle	Psoas
4	chr9:15745000-15749600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr9:15745200-15748400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:15745600-15748400	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:15746600-15748000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr9:15746600-15748400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:15746600-15748600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
10	chr9:15746600-15749200	Weak transcription	Primary T cells from cord blood	blood
11	chr9:15746800-15748400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:15746800-15748600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
13	chr9:15747200-15748000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr9:15747200-15748600	Weak transcription	Fetal Stomach	stomach
15	chr9:15747200-15748800	Weak transcription	Pancreas	Pancrea
16	chr9:15747200-15759600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:15747400-15748400	Weak transcription	Aorta	Aorta
18	chr9:15747600-15748600	Strong transcription	Fetal Thymus	thymus
19	chr9:15747600-15750000	Weak transcription	Brain Hippocampus Middle	brain
20	chr9:15747800-15748000	Strong transcription	Thymus	Thymus

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