Variant report

Variant	rs7848511
Chromosome Location	chr9:15674665-15674666
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 154 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:140)

rs_ID	r²[population]
rs10118359	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10119975	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10121393	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10121591	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10122339	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10123042	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10733295	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10738399	0.84[EUR][1000 genomes]
rs10756673	0.81[EUR][1000 genomes]
rs10756686	0.88[ASN][1000 genomes]
rs10756687	0.87[ASN][1000 genomes]
rs10756688	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10756689	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10756690	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10756691	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10810397	0.85[EUR][1000 genomes]
rs10810409	0.82[ASN][1000 genomes]
rs10810416	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10810419	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10810422	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10810424	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810426	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10810427	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10810428	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10810429	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10810430	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10810438	0.88[EUR][1000 genomes]
rs10810440	0.82[EUR][1000 genomes]
rs10962106	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10962118	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10962121	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10962123	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10962125	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10962126	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11792937	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11793900	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12004358	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12340969	0.87[ASN][1000 genomes]
rs12341679	0.83[EUR][1000 genomes]
rs12349323	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12352779	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12377371	0.88[EUR][1000 genomes]
rs13301516	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1355171	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1396706	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1533040	0.87[ASN][1000 genomes]
rs1553728	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs169342	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs183928	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1848582	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs192466	0.88[EUR][1000 genomes]
rs2175080	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2175082	0.87[ASN][1000 genomes]
rs2382532	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2457265	0.88[EUR][1000 genomes]
rs2457637	0.81[EUR][1000 genomes]
rs2663300	0.90[EUR][1000 genomes]
rs276432	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs276433	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs276435	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs276436	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs276441	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs276443	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs276444	0.90[EUR][1000 genomes]
rs276447	0.82[EUR][1000 genomes]
rs276448	0.89[EUR][1000 genomes]
rs276449	0.89[EUR][1000 genomes]
rs276453	0.90[EUR][1000 genomes]
rs276454	0.88[EUR][1000 genomes]
rs276455	0.90[EUR][1000 genomes]
rs2821545	0.89[EUR][1000 genomes]
rs28403566	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28410434	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28785887	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3119699	0.88[EUR][1000 genomes]
rs3122702	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34700988	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35057009	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36013000	0.80[EUR][1000 genomes]
rs36086644	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs432452	0.92[EUR][1000 genomes]
rs433849	0.88[EUR][1000 genomes]
rs4339736	0.83[EUR][1000 genomes]
rs442549	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs451878	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4740614	0.87[EUR][1000 genomes]
rs4740619	0.88[ASN][1000 genomes]
rs4740620	0.87[ASN][1000 genomes]
rs4740621	0.88[ASN][1000 genomes]
rs4741516	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4741519	0.84[ASN][1000 genomes]
rs4741522	0.82[EUR][1000 genomes]
rs4741528	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59883669	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62573118	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6474930	0.88[EUR][1000 genomes]
rs6474942	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6474944	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6474945	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6474946	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6474951	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6474952	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6474962	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6474963	0.81[EUR][1000 genomes]
rs6474964	0.80[EUR][1000 genomes]
rs7019430	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7023275	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7024640	0.80[AMR][1000 genomes]
rs7025420	0.81[EUR][1000 genomes]
rs7025669	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7028999	0.84[EUR][1000 genomes]
rs7030846	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7031365	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7032755	0.88[ASN][1000 genomes]
rs7032877	0.88[ASN][1000 genomes]
rs7034484	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7034781	0.82[EUR][1000 genomes]
rs7035863	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7036172	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7036285	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7036674	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7036875	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7037662	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7037908	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7042475	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7046351	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7049101	0.88[ASN][1000 genomes]
rs7049176	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs770524	0.88[EUR][1000 genomes]
rs7851056	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7854714	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7860024	0.84[EUR][1000 genomes]
rs7860869	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7863088	0.81[ASN][1000 genomes]
rs7873152	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7875367	0.89[EUR][1000 genomes]
rs9407624	0.89[EUR][1000 genomes]
rs954663	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs954664	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9650684	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv892630	chr9:15554960-15694690	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv892631	chr9:15590116-15694690	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv613656	chr9:15615321-15696501	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv466262	chr9:15615321-15727518	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv613657	chr9:15615321-15727518	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv613658	chr9:15636260-15727518	Strong transcription Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv466263	chr9:15641279-15726057	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv613659	chr9:15641279-15726057	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15645600-15689200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:15655200-15691600	Weak transcription	Thymus	Thymus
3	chr9:15669000-15720800	Weak transcription	Gastric	stomach
4	chr9:15669200-15676400	Weak transcription	Pancreas	Pancrea
5	chr9:15672000-15688600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:15674000-15675800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links