Variant report

Variant	rs4741522
Chromosome Location	chr9:15629455-15629456
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10118359	0.81[EUR][1000 genomes]
rs10121393	0.80[EUR][1000 genomes]
rs10121591	0.82[EUR][1000 genomes]
rs10733295	0.81[EUR][1000 genomes]
rs10738402	0.82[ASN][1000 genomes]
rs10756680	0.85[ASN][1000 genomes]
rs10810410	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10810416	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10810419	0.86[EUR][1000 genomes]
rs10810422	0.85[EUR][1000 genomes]
rs10810424	0.81[EUR][1000 genomes]
rs10810426	0.83[EUR][1000 genomes]
rs10962106	0.83[EUR][1000 genomes]
rs11792937	0.86[EUR][1000 genomes]
rs13301516	0.86[EUR][1000 genomes]
rs1355171	0.81[EUR][1000 genomes]
rs169342	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs183928	0.85[EUR][1000 genomes]
rs1848582	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs192466	0.81[EUR][1000 genomes]
rs2457265	0.85[EUR][1000 genomes]
rs2663300	0.83[EUR][1000 genomes]
rs276432	0.81[EUR][1000 genomes]
rs276436	0.84[EUR][1000 genomes]
rs276441	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs276443	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs276444	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs276447	0.87[AFR][1000 genomes]
rs276448	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs276449	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs276453	0.81[EUR][1000 genomes]
rs276454	0.81[EUR][1000 genomes]
rs276455	0.83[EUR][1000 genomes]
rs2821545	0.86[AFR][1000 genomes]
rs3119699	0.88[AFR][1000 genomes]
rs3122702	0.85[EUR][1000 genomes]
rs432452	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs433849	0.86[AFR][1000 genomes]
rs442549	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs451878	0.87[EUR][1000 genomes]
rs4740618	0.91[ASN][1000 genomes]
rs4741516	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4741520	0.81[ASN][1000 genomes]
rs4741527	0.80[ASN][1000 genomes]
rs6474930	0.85[AFR][1000 genomes]
rs6474946	0.81[EUR][1000 genomes]
rs7023275	0.85[EUR][1000 genomes]
rs7030846	0.82[EUR][1000 genomes]
rs7031365	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7034484	0.82[EUR][1000 genomes]
rs7036875	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7042475	0.85[EUR][1000 genomes]
rs7046351	0.81[EUR][1000 genomes]
rs7389023	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7389047	0.86[ASN][1000 genomes]
rs770524	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7848511	0.82[EUR][1000 genomes]
rs7851056	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7875367	0.87[AFR][1000 genomes]
rs9406528	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9407624	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs9886779	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv892629	chr9:15516375-15634326	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3407839	chr9:15530438-15665653	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv892630	chr9:15554960-15694690	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv613652	chr9:15579744-15661859	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv613653	chr9:15590116-15668606	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv892631	chr9:15590116-15694690	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv613654	chr9:15601971-15638364	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv613655	chr9:15602101-15670445	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv613656	chr9:15615321-15696501	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv466262	chr9:15615321-15727518	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv613657	chr9:15615321-15727518	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv969752	chr9:15615716-15639356	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15614200-15629800	Weak transcription	Fetal Lung	lung
2	chr9:15614400-15645000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:15625000-15635400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:15628800-15635600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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