Variant report

Variant	rs10121393
Chromosome Location	chr9:15690496-15690497
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15690406..15691946-chr9:15692582..15695063,2	MCF-7	breast:

Extended variants
information (count: 168 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs10118359	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10119975	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10121591	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10122339	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10123042	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10733295	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10738399	0.82[EUR][1000 genomes]
rs10738404	0.89[ASN][1000 genomes]
rs10738405	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10738406	0.87[ASN][1000 genomes]
rs10756690	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10756691	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10756693	0.82[ASN][1000 genomes]
rs10756694	0.87[ASN][1000 genomes]
rs10810397	0.83[EUR][1000 genomes]
rs10810416	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10810419	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10810422	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10810424	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10810426	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10810427	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10810428	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10810429	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10810430	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10810431	0.88[ASN][1000 genomes]
rs10810432	0.88[ASN][1000 genomes]
rs10810433	0.88[ASN][1000 genomes]
rs10810434	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10810438	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10810440	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10962106	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10962118	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10962119	0.81[AMR][1000 genomes]
rs10962121	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10962123	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10962125	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10962126	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10962146	0.81[AMR][1000 genomes]
rs10962153	0.82[AMR][1000 genomes]
rs11789563	0.89[ASN][1000 genomes]
rs11791627	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11792937	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11793900	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12004358	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12341679	0.82[EUR][1000 genomes]
rs12349323	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12352779	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12377371	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13301516	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1341734	0.81[AMR][1000 genomes]
rs1355171	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1396706	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1396707	0.87[ASN][1000 genomes]
rs1553728	0.81[EUR][1000 genomes]
rs169342	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs183928	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1848582	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs192466	0.87[EUR][1000 genomes]
rs1970497	0.82[AMR][1000 genomes]
rs2096121	0.81[AMR][1000 genomes]
rs2175080	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2382532	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2382534	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2457265	0.87[EUR][1000 genomes]
rs2663300	0.88[EUR][1000 genomes]
rs276432	0.85[EUR][1000 genomes]
rs276433	0.82[EUR][1000 genomes]
rs276435	0.83[EUR][1000 genomes]
rs276436	0.88[EUR][1000 genomes]
rs276441	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs276443	0.85[EUR][1000 genomes]
rs276444	0.89[EUR][1000 genomes]
rs276447	0.80[EUR][1000 genomes]
rs276448	0.88[EUR][1000 genomes]
rs276449	0.88[EUR][1000 genomes]
rs276453	0.88[EUR][1000 genomes]
rs276454	0.87[EUR][1000 genomes]
rs276455	0.88[EUR][1000 genomes]
rs2821545	0.87[EUR][1000 genomes]
rs28403566	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28410434	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28785887	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3119699	0.87[EUR][1000 genomes]
rs3122702	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34700988	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35057009	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36013000	0.84[AMR][1000 genomes]
rs36086644	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs432452	0.91[EUR][1000 genomes]
rs433849	0.86[EUR][1000 genomes]
rs4339736	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs442549	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs451878	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4740614	0.85[EUR][1000 genomes]
rs4741516	0.87[EUR][1000 genomes]
rs4741522	0.80[EUR][1000 genomes]
rs4741534	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs58517712	0.82[AMR][1000 genomes]
rs59883669	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62571268	0.81[AMR][1000 genomes]
rs62573118	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6474930	0.87[EUR][1000 genomes]
rs6474942	0.81[EUR][1000 genomes]
rs6474944	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6474945	0.82[EUR][1000 genomes]
rs6474946	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6474951	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6474952	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6474953	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6474954	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6474955	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6474962	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6474963	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6474964	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6474965	0.82[AMR][1000 genomes]
rs7018872	0.81[AMR][1000 genomes]
rs7019143	0.81[AMR][1000 genomes]
rs7019323	0.81[AMR][1000 genomes]
rs7019430	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7023275	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7024640	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7025420	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7028999	0.84[EUR][1000 genomes]
rs7030846	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7031365	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7033236	0.85[ASN][1000 genomes]
rs7034484	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7034781	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7035863	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7036285	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7036775	0.81[AMR][1000 genomes]
rs7036875	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7037662	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7037908	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7042475	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7046351	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7049176	0.83[EUR][1000 genomes]
rs770524	0.86[EUR][1000 genomes]
rs7847144	0.84[ASN][1000 genomes]
rs7848511	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7851056	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7854714	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7855235	0.88[ASN][1000 genomes]
rs7860024	0.83[EUR][1000 genomes]
rs7860869	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7861004	0.87[ASN][1000 genomes]
rs7868779	0.88[ASN][1000 genomes]
rs7869624	0.81[AMR][1000 genomes]
rs7872912	0.81[AMR][1000 genomes]
rs7873152	0.85[EUR][1000 genomes]
rs7875367	0.87[EUR][1000 genomes]
rs9407624	0.88[EUR][1000 genomes]
rs954663	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs954664	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv892630	chr9:15554960-15694690	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv892631	chr9:15590116-15694690	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv613656	chr9:15615321-15696501	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv466262	chr9:15615321-15727518	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv613657	chr9:15615321-15727518	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv613658	chr9:15636260-15727518	Strong transcription Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv466263	chr9:15641279-15726057	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv613659	chr9:15641279-15726057	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15655200-15691600	Weak transcription	Thymus	Thymus
2	chr9:15669000-15720800	Weak transcription	Gastric	stomach
3	chr9:15675000-15699000	Weak transcription	Left Ventricle	heart
4	chr9:15676600-15725000	Weak transcription	Pancreas	Pancrea
5	chr9:15677000-15695200	Weak transcription	Fetal Thymus	thymus
6	chr9:15679800-15746800	Weak transcription	Ovary	ovary
7	chr9:15684000-15697000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:15687600-15746600	Weak transcription	Aorta	Aorta
9	chr9:15688400-15691000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:15690000-15694000	Weak transcription	Right Ventricle	heart
11	chr9:15690000-15695800	Weak transcription	Primary T cells from cord blood	blood
12	chr9:15690200-15694600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr9:15690200-15694600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr9:15690400-15721800	Weak transcription	Fetal Lung	lung

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