Variant report

Variant	rs276436
Chromosome Location	chr9:15614370-15614371
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15609722..15611520-chr9:15613088..15614614,2	MCF-7	breast:

Extended variants
information (count: 204 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:189)

rs_ID	r²[population]
rs10118359	0.89[EUR][1000 genomes]
rs10119975	0.85[EUR][1000 genomes]
rs10121393	0.88[EUR][1000 genomes]
rs10121591	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10122339	0.86[EUR][1000 genomes]
rs10123042	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10481557	0.89[CEU][hapmap]
rs10733295	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[EUR][1000 genomes]
rs10738399	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10756673	0.80[EUR][1000 genomes]
rs10756674	0.89[CEU][hapmap]
rs10756677	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10756678	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10756679	0.82[CEU][hapmap]
rs10756680	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10756686	0.82[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs10756687	0.89[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs10756688	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs10756689	0.86[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs10756690	0.86[CEU][hapmap];0.94[CHB][hapmap]
rs10756691	0.85[EUR][1000 genomes]
rs10756697	0.85[CEU][hapmap]
rs10756704	0.81[CEU][hapmap]
rs10810397	0.93[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10810399	0.86[CEU][hapmap]
rs10810401	0.86[CEU][hapmap]
rs10810402	0.85[CEU][hapmap]
rs10810408	0.89[CEU][hapmap]
rs10810409	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10810416	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10810419	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10810422	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10810424	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10810426	0.96[CEU][hapmap];0.89[CHB][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10810427	0.96[CEU][hapmap];0.94[CHB][hapmap];0.88[EUR][1000 genomes]
rs10810428	0.89[CEU][hapmap];0.94[CHB][hapmap]
rs10810429	0.96[CEU][hapmap];0.83[CHB][hapmap];0.86[EUR][1000 genomes]
rs10810430	0.86[EUR][1000 genomes]
rs10810438	0.96[CEU][hapmap];0.94[CHB][hapmap];0.81[EUR][1000 genomes]
rs10810439	0.89[CEU][hapmap]
rs10810440	0.96[CEU][hapmap];0.89[CHB][hapmap]
rs10810442	0.89[CHB][hapmap]
rs10810446	0.90[CEU][hapmap]
rs10962066	0.89[CEU][hapmap]
rs10962070	0.89[CEU][hapmap]
rs10962098	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10962099	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10962106	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10962110	0.83[CEU][hapmap]
rs10962121	0.86[EUR][1000 genomes]
rs10962123	0.86[EUR][1000 genomes]
rs10962125	0.86[EUR][1000 genomes]
rs10962126	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[EUR][1000 genomes]
rs10962147	0.90[CEU][hapmap];0.89[CHB][hapmap]
rs10962149	0.89[CHB][hapmap]
rs10962152	0.90[CEU][hapmap];0.89[CHB][hapmap]
rs10962153	0.86[CEU][hapmap];0.89[CHB][hapmap]
rs10962156	0.90[CEU][hapmap]
rs10962170	0.89[CHB][hapmap]
rs11792937	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11793900	0.83[EUR][1000 genomes]
rs12004358	0.86[EUR][1000 genomes]
rs12340969	0.82[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs12341679	0.96[CEU][hapmap];0.89[CHB][hapmap]
rs12349323	0.85[EUR][1000 genomes]
rs12352779	0.86[EUR][1000 genomes]
rs12377371	0.96[CEU][hapmap];0.89[CHB][hapmap];0.81[EUR][1000 genomes]
rs12378499	0.90[CEU][hapmap]
rs13287834	0.89[CEU][hapmap]
rs13301516	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1341734	0.80[CEU][hapmap];0.89[CHB][hapmap]
rs1355171	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.88[EUR][1000 genomes]
rs1355173	0.89[CHB][hapmap]
rs1396706	0.93[CEU][hapmap];0.89[CHB][hapmap];0.83[EUR][1000 genomes]
rs1396707	0.85[CEU][hapmap]
rs1396708	0.85[CEU][hapmap]
rs1533040	0.89[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs1539171	0.85[CEU][hapmap];0.89[CHB][hapmap]
rs1539172	0.89[CEU][hapmap]
rs1539173	0.90[CEU][hapmap]
rs1553728	0.83[CEU][hapmap];0.89[CHB][hapmap]
rs169342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs183928	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1848582	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs192466	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs2055772	0.89[CEU][hapmap]
rs2096121	0.80[CEU][hapmap];0.89[CHB][hapmap]
rs2175080	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs2175082	0.82[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs2185663	0.90[CEU][hapmap]
rs2382534	0.83[CEU][hapmap]
rs2382540	0.90[CEU][hapmap]
rs2457265	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2457637	0.81[EUR][1000 genomes]
rs2663300	0.92[EUR][1000 genomes]
rs276432	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs276433	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs276435	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs276441	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs276443	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs276444	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs276447	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs276448	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs276449	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs276453	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs276454	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs276455	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2821545	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs28403566	0.80[EUR][1000 genomes]
rs28410434	0.86[EUR][1000 genomes]
rs28785887	0.81[EUR][1000 genomes]
rs3119699	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs3122702	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35057009	0.86[EUR][1000 genomes]
rs36086644	0.86[EUR][1000 genomes]
rs4146291	0.81[CEU][hapmap]
rs432452	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs433849	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs442549	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs451878	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4740614	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4740615	0.89[CEU][hapmap]
rs4740619	0.89[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4740620	0.85[ASN][1000 genomes]
rs4740621	0.84[ASN][1000 genomes]
rs4740624	0.89[CEU][hapmap]
rs4741516	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4741517	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4741519	0.86[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4741520	0.89[ASN][1000 genomes]
rs4741522	0.84[EUR][1000 genomes]
rs4741528	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs4741534	0.85[CEU][hapmap];0.83[CHB][hapmap]
rs4741535	0.85[CEU][hapmap]
rs62573118	0.86[EUR][1000 genomes]
rs6474930	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6474931	0.86[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs6474942	0.85[ASN][1000 genomes]
rs6474944	0.89[CEU][hapmap];0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs6474945	0.86[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs6474946	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6474951	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs6474952	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs6474954	0.85[CEU][hapmap];0.83[CHB][hapmap]
rs6474966	0.94[CHB][hapmap]
rs7019851	0.89[CEU][hapmap];0.89[CHB][hapmap]
rs7023275	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7024640	0.85[CEU][hapmap]
rs7025669	0.86[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs7030846	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7031365	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7032755	0.82[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs7032877	0.84[ASN][1000 genomes]
rs7034484	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7034781	0.96[CEU][hapmap];0.94[CHB][hapmap]
rs7035863	0.96[CEU][hapmap];0.89[CHB][hapmap];0.87[EUR][1000 genomes]
rs7036172	0.86[CEU][hapmap];0.88[ASN][1000 genomes]
rs7036285	0.86[EUR][1000 genomes]
rs7036674	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs7036875	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7037662	0.86[EUR][1000 genomes]
rs7037908	0.86[EUR][1000 genomes]
rs7042475	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7043770	0.90[CEU][hapmap]
rs7045018	0.89[CHB][hapmap]
rs7046351	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7049101	0.84[ASN][1000 genomes]
rs7389047	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7389629	0.86[CEU][hapmap]
rs7467156	0.96[CEU][hapmap];0.89[CHB][hapmap]
rs7467207	0.96[CEU][hapmap];0.83[CHB][hapmap]
rs770524	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs7847144	0.85[CEU][hapmap]
rs7848511	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7851056	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7859780	0.86[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7860528	0.93[CEU][hapmap]
rs7860869	0.96[CEU][hapmap];0.89[CHB][hapmap];0.82[EUR][1000 genomes]
rs7863088	0.89[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7866641	0.89[CHB][hapmap]
rs7869624	0.89[CHB][hapmap]
rs7872912	0.89[CHB][hapmap]
rs7873152	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7874533	0.88[CEU][hapmap]
rs7875367	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9407624	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs954663	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs954664	0.85[EUR][1000 genomes]
rs9650684	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv892629	chr9:15516375-15634326	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3407839	chr9:15530438-15665653	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv892630	chr9:15554960-15694690	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1028357	chr9:15565670-15622556	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv613652	chr9:15579744-15661859	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv613653	chr9:15590116-15668606	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv892631	chr9:15590116-15694690	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv613654	chr9:15601971-15638364	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv613655	chr9:15602101-15670445	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15587000-15620400	Weak transcription	Pancreas	Pancrea
2	chr9:15599000-15617800	Weak transcription	Aorta	Aorta
3	chr9:15600200-15614400	Weak transcription	Gastric	stomach
4	chr9:15600600-15617600	Weak transcription	Fetal Stomach	stomach
5	chr9:15601000-15620000	Weak transcription	Ovary	ovary
6	chr9:15608000-15618400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:15609800-15625800	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:15611200-15628200	Weak transcription	Thymus	Thymus
9	chr9:15613000-15614400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:15613000-15622400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr9:15613800-15614400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
12	chr9:15613800-15614400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:15614000-15614400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
14	chr9:15614000-15614400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
15	chr9:15614000-15614400	ZNF genes & repeats	Left Ventricle	heart
16	chr9:15614200-15614400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr9:15614200-15614400	ZNF genes & repeats	Fetal Thymus	thymus
18	chr9:15614200-15622400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr9:15614200-15629800	Weak transcription	Fetal Lung	lung

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