Variant report

Variant	rs12352779
Chromosome Location	chr9:15700723-15700724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 176 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:165)

rs_ID	r²[population]
rs10118359	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10119975	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10121393	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10121591	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10122339	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10123042	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10733295	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10738404	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10738405	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10738406	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10756691	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10756693	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10756694	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10756695	0.81[EUR][1000 genomes]
rs10810397	0.80[EUR][1000 genomes]
rs10810416	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10810419	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10810422	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10810424	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10810426	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10810427	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10810428	0.81[AMR][1000 genomes]
rs10810429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810430	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810431	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10810432	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10810433	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10810434	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10810438	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10810440	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10810446	0.81[EUR][1000 genomes]
rs10962106	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10962118	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10962119	0.82[AMR][1000 genomes]
rs10962121	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10962123	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10962124	0.82[EUR][1000 genomes]
rs10962125	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10962126	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10962146	0.84[AMR][1000 genomes]
rs10962147	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10962152	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10962153	0.85[AMR][1000 genomes]
rs11789563	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11791627	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792937	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11793900	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12004358	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12341679	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12349323	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12377371	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13283620	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13287834	0.80[EUR][1000 genomes]
rs13295778	0.82[EUR][1000 genomes]
rs13301516	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1341734	0.84[AMR][1000 genomes]
rs1355171	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1355173	0.81[AMR][1000 genomes]
rs1396706	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1396707	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1396708	0.81[EUR][1000 genomes]
rs1509310	0.82[EUR][1000 genomes]
rs1539171	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1539172	0.81[EUR][1000 genomes]
rs1539173	0.81[EUR][1000 genomes]
rs169342	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs183928	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1848582	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs192466	0.84[EUR][1000 genomes]
rs1970497	0.85[AMR][1000 genomes]
rs2096121	0.84[AMR][1000 genomes]
rs2136355	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2175080	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2185663	0.81[EUR][1000 genomes]
rs2382534	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2382540	0.81[EUR][1000 genomes]
rs2457265	0.84[EUR][1000 genomes]
rs2663300	0.85[EUR][1000 genomes]
rs276432	0.84[EUR][1000 genomes]
rs276433	0.81[EUR][1000 genomes]
rs276435	0.83[EUR][1000 genomes]
rs276436	0.86[EUR][1000 genomes]
rs276441	0.82[EUR][1000 genomes]
rs276443	0.81[EUR][1000 genomes]
rs276444	0.86[EUR][1000 genomes]
rs276448	0.85[EUR][1000 genomes]
rs276449	0.85[EUR][1000 genomes]
rs276453	0.85[EUR][1000 genomes]
rs276454	0.84[EUR][1000 genomes]
rs276455	0.85[EUR][1000 genomes]
rs2821545	0.84[EUR][1000 genomes]
rs28403566	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28410434	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28785887	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3119699	0.84[EUR][1000 genomes]
rs3122702	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34700988	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35057009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36013000	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs36086644	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs432452	0.88[EUR][1000 genomes]
rs433849	0.83[EUR][1000 genomes]
rs4339736	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs442549	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs451878	0.88[EUR][1000 genomes]
rs4740614	0.82[EUR][1000 genomes]
rs4741516	0.84[EUR][1000 genomes]
rs4741534	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58517712	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs59883669	0.82[AMR][1000 genomes]
rs62571268	0.84[AMR][1000 genomes]
rs62573118	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6474930	0.84[EUR][1000 genomes]
rs6474944	0.80[AMR][1000 genomes]
rs6474946	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6474951	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6474952	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6474953	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6474954	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6474955	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6474962	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6474963	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6474964	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6474965	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7018872	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7019143	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7019323	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7019430	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7019851	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7023275	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7024640	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7025420	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7028999	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7030846	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7031365	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7033236	0.96[ASN][1000 genomes]
rs7034484	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7034781	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7035863	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7036285	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7036775	0.84[AMR][1000 genomes]
rs7036875	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7037662	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7037908	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7042475	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7043770	0.81[EUR][1000 genomes]
rs7046351	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7467207	0.83[AMR][1000 genomes]
rs770524	0.83[EUR][1000 genomes]
rs7847144	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7848511	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7851056	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7855235	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7860024	0.86[EUR][1000 genomes]
rs7860869	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7861004	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7861802	0.81[EUR][1000 genomes]
rs7868779	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7869624	0.84[AMR][1000 genomes]
rs7872912	0.84[AMR][1000 genomes]
rs7873152	0.82[EUR][1000 genomes]
rs7875367	0.84[EUR][1000 genomes]
rs9407624	0.85[EUR][1000 genomes]
rs954663	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs954664	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv466262	chr9:15615321-15727518	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv613657	chr9:15615321-15727518	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv613658	chr9:15636260-15727518	Strong transcription Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv466263	chr9:15641279-15726057	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv613659	chr9:15641279-15726057	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv892634	chr9:15696501-15746168	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15669000-15720800	Weak transcription	Gastric	stomach
2	chr9:15676600-15725000	Weak transcription	Pancreas	Pancrea
3	chr9:15679800-15746800	Weak transcription	Ovary	ovary
4	chr9:15687600-15746600	Weak transcription	Aorta	Aorta
5	chr9:15690400-15721800	Weak transcription	Fetal Lung	lung
6	chr9:15691800-15717000	Weak transcription	Thymus	Thymus
7	chr9:15693800-15703600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr9:15694000-15700800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr9:15694200-15705600	Weak transcription	Adipose Nuclei	Adipose
10	chr9:15697400-15700800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:15697800-15706400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:15699000-15701000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr9:15699600-15717400	Weak transcription	Fetal Stomach	stomach
14	chr9:15699600-15728200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr9:15700200-15701400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr9:15700200-15701800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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