Variant report

Variant	rs10962126
Chromosome Location	chr9:15723336-15723337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 294 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:282)

rs_ID	r²[population]
rs1009468	0.88[CHB][hapmap];0.82[GIH][hapmap];0.95[MEX][hapmap];0.80[TSI][hapmap]
rs10118359	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10119975	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10121393	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10121591	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10122339	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10123042	0.89[EUR][1000 genomes]
rs10481557	0.89[CEU][hapmap]
rs10733295	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];0.96[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.94[EUR][1000 genomes]
rs10733305	0.89[CEU][hapmap]
rs10738404	0.83[EUR][1000 genomes]
rs10738405	0.83[EUR][1000 genomes]
rs10738406	0.83[EUR][1000 genomes]
rs10738417	0.89[CEU][hapmap]
rs10756671	0.81[CEU][hapmap]
rs10756674	0.89[CEU][hapmap];0.81[GIH][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap]
rs10756677	0.89[CEU][hapmap];0.88[CHB][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.83[MEX][hapmap]
rs10756679	0.85[CEU][hapmap]
rs10756686	0.85[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs10756687	0.89[CEU][hapmap];0.84[CHB][hapmap];0.83[GIH][hapmap];0.84[JPT][hapmap];0.83[MEX][hapmap]
rs10756688	0.89[CEU][hapmap];0.89[CHB][hapmap];0.82[CHD][hapmap];0.83[GIH][hapmap];0.89[JPT][hapmap];0.83[MEX][hapmap]
rs10756689	0.89[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap]
rs10756690	0.89[CEU][hapmap];0.84[CHB][hapmap]
rs10756691	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10756693	0.80[EUR][1000 genomes]
rs10756694	0.83[EUR][1000 genomes]
rs10756695	0.81[EUR][1000 genomes]
rs10756696	0.82[EUR][1000 genomes]
rs10756697	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs10756704	0.81[CEU][hapmap]
rs10756714	0.85[CEU][hapmap]
rs10810397	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs10810399	0.89[CEU][hapmap]
rs10810401	0.89[CEU][hapmap]
rs10810402	0.85[CEU][hapmap];0.81[GIH][hapmap];0.81[TSI][hapmap]
rs10810408	0.89[CEU][hapmap];0.81[GIH][hapmap];0.87[MEX][hapmap]
rs10810416	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10810419	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10810422	0.90[EUR][1000 genomes]
rs10810424	0.94[EUR][1000 genomes]
rs10810426	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10810427	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.82[YRI][hapmap];0.94[EUR][1000 genomes]
rs10810428	0.89[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs10810429	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10810430	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10810431	0.83[EUR][1000 genomes]
rs10810432	0.83[EUR][1000 genomes]
rs10810433	0.83[EUR][1000 genomes]
rs10810434	0.83[EUR][1000 genomes]
rs10810435	0.81[EUR][1000 genomes]
rs10810436	0.82[EUR][1000 genomes]
rs10810438	0.96[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10810439	0.89[CEU][hapmap]
rs10810440	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10810442	0.88[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10810446	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10810455	0.89[CEU][hapmap]
rs10810461	0.81[CEU][hapmap]
rs10962066	0.89[CEU][hapmap];0.81[GIH][hapmap];0.87[MEX][hapmap];0.80[TSI][hapmap]
rs10962070	0.89[CEU][hapmap]
rs10962098	0.89[CEU][hapmap];0.89[CHB][hapmap]
rs10962099	0.89[CEU][hapmap];0.89[CHB][hapmap]
rs10962106	0.87[EUR][1000 genomes]
rs10962110	0.85[CEU][hapmap]
rs10962118	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10962121	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10962123	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10962124	0.82[EUR][1000 genomes]
rs10962125	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10962146	0.95[AMR][1000 genomes]
rs10962147	0.89[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10962149	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10962151	0.81[CEU][hapmap]
rs10962152	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10962153	0.85[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10962156	0.89[CEU][hapmap];0.85[AMR][1000 genomes]
rs10962157	0.81[CEU][hapmap]
rs10962158	0.81[CEU][hapmap]
rs10962170	0.88[CHB][hapmap]
rs11515218	0.81[AMR][1000 genomes]
rs11521158	0.81[AMR][1000 genomes]
rs1169478	0.82[CHB][hapmap]
rs1169479	0.87[CHB][hapmap]
rs1169480	0.88[CHB][hapmap]
rs11789563	0.83[EUR][1000 genomes]
rs11791627	0.83[EUR][1000 genomes]
rs11792937	0.90[EUR][1000 genomes]
rs11793900	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12004358	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12340969	0.85[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap]
rs12341679	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12349323	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12352779	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12377371	0.96[CEU][hapmap];0.89[CHB][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12378499	0.89[CEU][hapmap]
rs1328288	0.85[CHB][hapmap]
rs13283620	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13287834	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13295778	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13296276	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13301516	0.90[EUR][1000 genomes]
rs1341734	0.88[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1341735	0.82[AMR][1000 genomes]
rs1341737	0.86[MEX][hapmap]
rs1355171	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.96[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes]
rs1355173	0.88[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1396706	0.93[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1396707	0.85[CEU][hapmap];0.88[CHB][hapmap];0.87[GIH][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs1396708	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs1509310	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1533040	0.89[CEU][hapmap];0.84[CHB][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];0.83[MEX][hapmap]
rs1539171	0.85[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1539172	0.89[CEU][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1539173	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1553728	0.85[CEU][hapmap];0.89[CHB][hapmap]
rs1572978	0.88[CHB][hapmap]
rs169342	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[EUR][1000 genomes]
rs183928	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[EUR][1000 genomes]
rs1848582	0.88[EUR][1000 genomes]
rs192466	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs1970497	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2055772	0.89[CEU][hapmap];0.81[GIH][hapmap];0.87[MEX][hapmap]
rs2066292	0.82[CHB][hapmap];0.83[LWK][hapmap]
rs2096121	0.88[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2105317	0.81[CEU][hapmap]
rs2136355	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2153725	0.88[CHB][hapmap]
rs2153726	0.88[CHB][hapmap]
rs2153727	0.88[CHB][hapmap];0.86[MEX][hapmap];0.80[TSI][hapmap]
rs2175080	0.96[CEU][hapmap];0.88[CHB][hapmap];0.98[GIH][hapmap];0.83[LWK][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2175082	0.82[CEU][hapmap];0.83[CHB][hapmap];0.81[GIH][hapmap];0.84[JPT][hapmap];0.83[MEX][hapmap]
rs2185663	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2185665	0.88[CHB][hapmap]
rs2382534	0.85[CEU][hapmap];0.88[CHB][hapmap];0.83[EUR][1000 genomes]
rs2382540	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2382553	0.88[CHB][hapmap]
rs2457265	0.85[EUR][1000 genomes]
rs2663300	0.86[EUR][1000 genomes]
rs276432	0.83[EUR][1000 genomes]
rs276433	0.80[EUR][1000 genomes]
rs276435	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs276436	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[EUR][1000 genomes]
rs276441	0.83[EUR][1000 genomes]
rs276443	0.82[EUR][1000 genomes]
rs276444	0.87[EUR][1000 genomes]
rs276448	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs276449	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs276453	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs276454	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs276455	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2794634	0.88[CHB][hapmap]
rs2794636	0.88[CHB][hapmap]
rs2821545	0.92[CEU][hapmap];0.93[GIH][hapmap];0.88[LWK][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs28403566	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28410434	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28785887	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2891007	0.88[CHB][hapmap]
rs3008686	0.88[CHB][hapmap]
rs3119699	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs3122702	0.88[EUR][1000 genomes]
rs34700988	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35057009	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36013000	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36086644	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4146290	0.81[CEU][hapmap]
rs4146291	0.81[CEU][hapmap]
rs432452	1.00[CEU][hapmap];0.82[YRI][hapmap];0.89[EUR][1000 genomes]
rs433849	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs4339736	0.81[EUR][1000 genomes]
rs442549	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs451878	1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[GIH][hapmap];0.84[JPT][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs4740614	0.96[CEU][hapmap];0.93[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs4740615	0.89[CEU][hapmap];0.83[GIH][hapmap];0.83[MEX][hapmap];0.80[TSI][hapmap]
rs4740619	0.89[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];0.83[GIH][hapmap];0.89[JPT][hapmap];0.87[MEX][hapmap]
rs4740624	0.89[CEU][hapmap]
rs4741516	0.85[EUR][1000 genomes]
rs4741519	0.89[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap]
rs4741528	0.89[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];0.85[GIH][hapmap];0.84[JPT][hapmap];0.83[MEX][hapmap]
rs4741534	0.85[CEU][hapmap];0.82[CHB][hapmap];0.87[GIH][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs4741535	0.85[CEU][hapmap]
rs58517712	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62571268	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62573118	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6474930	0.85[EUR][1000 genomes]
rs6474931	0.88[CEU][hapmap];0.84[CHB][hapmap]
rs6474944	0.89[CEU][hapmap];0.94[CHB][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs6474945	0.89[CEU][hapmap];0.94[CHB][hapmap]
rs6474946	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6474951	0.96[CEU][hapmap];0.88[CHB][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6474952	0.96[CEU][hapmap];0.88[CHB][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6474953	0.83[EUR][1000 genomes]
rs6474954	0.85[CEU][hapmap];0.82[CHB][hapmap];0.87[GIH][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs6474955	0.83[EUR][1000 genomes]
rs6474962	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6474963	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6474964	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6474965	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6474966	0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6474967	0.86[MEX][hapmap];0.80[TSI][hapmap]
rs6474974	0.81[CEU][hapmap]
rs7018872	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7019143	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7019205	0.88[CHB][hapmap];0.82[GIH][hapmap];0.95[MEX][hapmap]
rs7019323	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7019430	0.89[EUR][1000 genomes]
rs7019851	0.89[CEU][hapmap];0.88[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7023275	1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[GIH][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs7024640	0.85[CEU][hapmap];0.88[CHB][hapmap];0.85[GIH][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs7025420	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7025669	0.89[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap]
rs7028999	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7030846	0.93[EUR][1000 genomes]
rs7031365	0.88[EUR][1000 genomes]
rs7032457	0.88[CHB][hapmap];0.82[GIH][hapmap];0.91[MEX][hapmap];0.80[TSI][hapmap]
rs7032634	0.88[CHB][hapmap]
rs7032755	0.82[CEU][hapmap];0.83[GIH][hapmap];0.89[JPT][hapmap];0.87[MEX][hapmap]
rs7034484	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.93[EUR][1000 genomes]
rs7034781	0.83[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7035863	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7036172	0.89[CEU][hapmap]
rs7036285	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7036674	0.87[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap]
rs7036775	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7036875	0.90[EUR][1000 genomes]
rs7037662	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7037908	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7042475	0.88[EUR][1000 genomes]
rs7043770	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7045018	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7046351	0.92[EUR][1000 genomes]
rs7047045	0.88[CHB][hapmap]
rs7389629	0.89[CEU][hapmap]
rs7467156	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs7467207	0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs770191	0.88[CHB][hapmap];0.88[LWK][hapmap]
rs770211	0.87[CHB][hapmap]
rs770213	0.88[CHB][hapmap]
rs770215	0.88[CHB][hapmap]
rs770524	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs7846970	0.82[AMR][1000 genomes]
rs7847144	0.85[CEU][hapmap];0.88[CHB][hapmap];0.87[GIH][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs7848511	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7851056	0.91[EUR][1000 genomes]
rs7853744	0.88[CHB][hapmap];0.84[GIH][hapmap];0.91[MEX][hapmap]
rs7854714	0.80[EUR][1000 genomes]
rs7855235	0.83[EUR][1000 genomes]
rs7859780	0.89[CEU][hapmap]
rs7860024	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7860528	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7860755	0.81[CEU][hapmap]
rs7860869	0.96[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7860992	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7861004	0.82[EUR][1000 genomes]
rs7861802	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7863088	0.89[CEU][hapmap];0.83[CHB][hapmap];0.84[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap]
rs7866641	0.88[CHB][hapmap];0.91[MEX][hapmap]
rs7868779	0.81[EUR][1000 genomes]
rs7869624	0.83[ASW][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.95[MEX][hapmap];0.80[MKK][hapmap];0.85[TSI][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7872912	0.88[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7873152	1.00[CEU][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs7873776	0.81[CEU][hapmap]
rs7874533	0.88[CEU][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap]
rs7875367	1.00[CEU][hapmap];0.93[GIH][hapmap];0.88[LWK][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs9298738	0.88[CHB][hapmap]
rs9298739	0.86[CHB][hapmap]
rs9298740	0.96[CEU][hapmap];0.88[CHB][hapmap];0.81[YRI][hapmap]
rs9298741	0.96[CEU][hapmap];0.88[CHB][hapmap]
rs9406537	0.87[CHB][hapmap];0.82[GIH][hapmap];0.90[MEX][hapmap];0.80[TSI][hapmap]
rs9406542	0.87[CHB][hapmap]
rs9407624	0.86[EUR][1000 genomes]
rs9407648	0.87[CHB][hapmap]
rs9407649	0.88[CHB][hapmap]
rs9407650	0.88[CHB][hapmap]
rs9407651	0.88[CHB][hapmap]
rs9407652	0.88[CHB][hapmap]
rs9407654	0.83[ASW][hapmap];0.88[CHB][hapmap];0.82[GIH][hapmap];0.88[LWK][hapmap];0.86[MEX][hapmap]
rs9407657	0.88[CHB][hapmap]
rs9407661	0.88[CHB][hapmap]
rs9407662	0.88[CHB][hapmap]
rs954663	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs954664	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs955369	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv466262	chr9:15615321-15727518	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv613657	chr9:15615321-15727518	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv613658	chr9:15636260-15727518	Strong transcription Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv466263	chr9:15641279-15726057	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv613659	chr9:15641279-15726057	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv892634	chr9:15696501-15746168	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv32957	chr9:15720059-15737099	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10962126	ADAMTSL1	cis	parietal	SCAN
rs10962126	C9orf93	cis	parietal	SCAN
rs10962126	C9orf93	cis	cerebellum	SCAN

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15676600-15725000	Weak transcription	Pancreas	Pancrea
2	chr9:15679800-15746800	Weak transcription	Ovary	ovary
3	chr9:15687600-15746600	Weak transcription	Aorta	Aorta
4	chr9:15699600-15728200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:15715200-15746200	Weak transcription	Left Ventricle	heart
6	chr9:15715600-15733800	Weak transcription	Brain Anterior Caudate	brain
7	chr9:15716000-15727800	Weak transcription	Fetal Thymus	thymus
8	chr9:15717400-15727600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:15718000-15749600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr9:15718400-15724800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr9:15718600-15746600	Weak transcription	Thymus	Thymus
12	chr9:15718800-15727800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:15720400-15733400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr9:15720600-15735200	Weak transcription	Adipose Nuclei	Adipose
15	chr9:15721400-15724000	Weak transcription	NHDF-Ad	bronchial
16	chr9:15721600-15725000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:15722200-15723600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr9:15722200-15726400	Enhancers	Fetal Lung	lung
19	chr9:15722400-15723400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:15722600-15723400	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr9:15722600-15723400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr9:15722600-15723400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr9:15722600-15723400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr9:15722600-15723400	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr9:15722600-15723400	Enhancers	Fetal Stomach	stomach
26	chr9:15722600-15725400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:15722800-15723400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr9:15722800-15723400	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr9:15722800-15723400	Enhancers	Brain Hippocampus Middle	brain
30	chr9:15722800-15724200	Enhancers	NH-A	brain
31	chr9:15722800-15725200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:15722800-15725400	Enhancers	Muscle Satellite Cultured Cells	--
33	chr9:15723000-15723400	Enhancers	H1 Cell Line	embryonic stem cell
34	chr9:15723000-15723400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:15723000-15723400	Enhancers	Brain Germinal Matrix	brain
36	chr9:15723000-15723400	Enhancers	NHLF	lung
37	chr9:15723200-15723600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr9:15723200-15724800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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