Variant report

Variant	rs1396708
Chromosome Location	chr9:15705479-15705480
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 259 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:248)

rs_ID	r²[population]
rs10119975	0.81[EUR][1000 genomes]
rs10283865	0.81[CEU][hapmap]
rs1039813	0.81[EUR][1000 genomes]
rs1039814	0.81[EUR][1000 genomes]
rs10481557	0.84[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs10733295	0.85[CEU][hapmap]
rs10733301	0.86[AMR][1000 genomes]
rs10733302	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10733305	0.96[CEU][hapmap];0.95[CHB][hapmap]
rs10738402	0.83[EUR][1000 genomes]
rs10738403	0.91[EUR][1000 genomes]
rs10738404	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10738405	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10738406	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10738411	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10738413	0.80[EUR][1000 genomes]
rs10738417	0.96[CEU][hapmap];0.86[CHB][hapmap]
rs10756671	0.89[CEU][hapmap]
rs10756674	0.96[CEU][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes]
rs10756676	0.82[EUR][1000 genomes]
rs10756677	0.96[CEU][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs10756678	0.83[EUR][1000 genomes]
rs10756679	0.92[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs10756680	0.84[EUR][1000 genomes]
rs10756686	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs10756687	0.96[CEU][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs10756688	0.96[CEU][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs10756689	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs10756690	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs10756691	0.81[EUR][1000 genomes]
rs10756692	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10756693	0.93[EUR][1000 genomes]
rs10756694	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10756695	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10756696	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10756697	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10756704	0.89[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10756709	0.95[CHB][hapmap]
rs10756710	0.95[CHB][hapmap]
rs10756711	0.95[CHB][hapmap]
rs10756714	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs10756715	0.85[CHB][hapmap]
rs10810399	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs10810400	0.82[EUR][1000 genomes]
rs10810401	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs10810402	0.92[CEU][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes]
rs10810405	0.80[EUR][1000 genomes]
rs10810408	0.96[CEU][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs10810409	0.85[EUR][1000 genomes]
rs10810416	0.85[CEU][hapmap]
rs10810419	0.85[CEU][hapmap]
rs10810426	0.85[CEU][hapmap]
rs10810427	0.85[CEU][hapmap]
rs10810428	0.96[CEU][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs10810429	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs10810430	0.82[EUR][1000 genomes]
rs10810431	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10810432	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10810433	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10810434	0.97[EUR][1000 genomes]
rs10810435	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10810436	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10810438	0.82[CEU][hapmap]
rs10810439	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10810440	0.82[CEU][hapmap]
rs10810442	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs10810446	0.95[CHB][hapmap]
rs10810450	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10810451	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10810455	0.96[CEU][hapmap];0.95[CHB][hapmap]
rs10810461	1.00[ASW][hapmap];0.89[CEU][hapmap];0.86[CHB][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap]
rs10810462	0.85[CHB][hapmap]
rs10962066	0.96[CEU][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs10962070	0.84[ASW][hapmap];0.96[CEU][hapmap];0.90[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs10962098	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs10962099	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs10962110	0.92[CEU][hapmap];0.81[CHB][hapmap];0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10962121	0.82[EUR][1000 genomes]
rs10962123	0.82[EUR][1000 genomes]
rs10962124	0.81[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10962125	0.81[EUR][1000 genomes]
rs10962126	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs10962142	0.84[ASW][hapmap];0.85[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10962149	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs10962151	0.89[CEU][hapmap];0.95[CHB][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10962156	0.95[CHB][hapmap]
rs10962157	0.89[CEU][hapmap];0.95[CHB][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10962158	0.89[CEU][hapmap];0.95[CHB][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10962163	0.81[EUR][1000 genomes]
rs10962167	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11789538	0.91[EUR][1000 genomes]
rs11789563	0.98[EUR][1000 genomes]
rs11791627	0.96[EUR][1000 genomes]
rs11793900	0.85[EUR][1000 genomes]
rs12004358	0.82[EUR][1000 genomes]
rs12057012	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12340969	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs12341679	0.82[CEU][hapmap];0.83[MEX][hapmap]
rs12346205	0.80[AMR][1000 genomes]
rs12349323	0.80[EUR][1000 genomes]
rs12349973	0.80[AMR][1000 genomes]
rs12352779	0.81[EUR][1000 genomes]
rs12377371	0.82[CEU][hapmap]
rs12378499	0.95[CHB][hapmap]
rs12552653	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12553816	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs13287834	0.81[CHB][hapmap]
rs13291638	0.89[EUR][1000 genomes]
rs13296360	0.95[CHB][hapmap]
rs1341732	0.84[CHB][hapmap]
rs1341737	0.95[CHB][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap]
rs1341738	0.95[CHB][hapmap]
rs1355171	0.85[CEU][hapmap];0.81[TSI][hapmap]
rs1396707	1.00[CEU][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1509310	0.95[EUR][1000 genomes]
rs1533040	0.96[CEU][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs1539171	0.83[MEX][hapmap]
rs1539172	0.95[CHB][hapmap];0.86[CHD][hapmap];0.86[GIH][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap]
rs1539173	0.95[CHB][hapmap]
rs1553728	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs1592099	0.95[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes]
rs169342	0.85[CEU][hapmap]
rs1812686	0.83[EUR][1000 genomes]
rs183928	0.85[CEU][hapmap]
rs1891211	0.81[CEU][hapmap]
rs1891212	0.81[CEU][hapmap];0.86[TSI][hapmap]
rs192466	0.81[CEU][hapmap]
rs1984246	0.86[TSI][hapmap]
rs2055772	0.96[CEU][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs2105315	0.95[CHB][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2105317	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2105318	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2105319	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2136355	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2175080	0.89[CEU][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs2175082	0.89[CEU][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs2185663	0.95[CHB][hapmap]
rs2211323	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2382532	0.89[EUR][1000 genomes]
rs2382534	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2382538	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2382540	0.95[CHB][hapmap]
rs276435	0.85[CEU][hapmap]
rs276436	0.85[CEU][hapmap]
rs276448	0.85[CEU][hapmap]
rs276449	0.85[CEU][hapmap]
rs276453	0.85[CEU][hapmap]
rs276455	0.85[CEU][hapmap]
rs28410434	0.82[EUR][1000 genomes]
rs3119699	0.84[CEU][hapmap]
rs35057009	0.82[EUR][1000 genomes]
rs35146544	0.88[EUR][1000 genomes]
rs36086644	0.82[EUR][1000 genomes]
rs4146290	0.89[CEU][hapmap];0.95[CHB][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4146291	1.00[ASW][hapmap];0.89[CEU][hapmap];0.95[CHB][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4146293	0.95[CHB][hapmap]
rs432452	0.85[CEU][hapmap]
rs4339736	0.91[EUR][1000 genomes]
rs442549	0.85[CEU][hapmap]
rs4448380	0.84[EUR][1000 genomes]
rs451878	0.85[CEU][hapmap]
rs4740614	0.82[CEU][hapmap]
rs4740615	0.96[CEU][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs4740618	0.81[EUR][1000 genomes]
rs4740619	0.96[CEU][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs4740620	0.87[EUR][1000 genomes]
rs4740621	0.82[EUR][1000 genomes]
rs4740622	0.84[EUR][1000 genomes]
rs4740624	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4740628	0.85[CHB][hapmap]
rs4741510	0.84[ASW][hapmap];0.81[CEU][hapmap];0.91[GIH][hapmap];1.00[LWK][hapmap];0.88[TSI][hapmap]
rs4741515	0.81[EUR][1000 genomes]
rs4741517	0.82[EUR][1000 genomes]
rs4741519	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs4741520	0.81[EUR][1000 genomes]
rs4741528	0.96[CEU][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs4741529	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4741534	1.00[CEU][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes]
rs4741535	0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4741545	1.00[ASW][hapmap];0.95[CHB][hapmap];0.80[CHD][hapmap];0.91[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.85[TSI][hapmap]
rs4741546	0.82[ASW][hapmap];0.95[CHB][hapmap];1.00[LWK][hapmap]
rs4961713	0.81[AMR][1000 genomes]
rs62573118	0.82[EUR][1000 genomes]
rs6474931	0.96[CEU][hapmap]
rs6474942	0.90[EUR][1000 genomes]
rs6474944	0.96[CEU][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs6474945	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs6474951	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs6474952	0.89[CEU][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs6474953	0.97[EUR][1000 genomes]
rs6474954	1.00[CEU][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes]
rs6474955	0.97[EUR][1000 genomes]
rs6474966	0.85[CEU][hapmap]
rs6474967	0.84[ASW][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.83[MEX][hapmap]
rs6474974	0.89[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7019430	0.91[EUR][1000 genomes]
rs7019851	0.83[MEX][hapmap]
rs7023275	0.85[CEU][hapmap];0.83[MEX][hapmap]
rs7024640	1.00[CEU][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes]
rs7025669	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs7027202	0.81[CEU][hapmap];0.86[TSI][hapmap]
rs7032755	0.89[CEU][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs7032877	0.82[EUR][1000 genomes]
rs7033236	0.90[EUR][1000 genomes]
rs7034484	0.84[CEU][hapmap]
rs7034781	0.82[CEU][hapmap]
rs7035863	0.88[CEU][hapmap]
rs7036172	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs7036285	0.82[EUR][1000 genomes]
rs7036674	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs7037662	0.82[EUR][1000 genomes]
rs7037908	0.82[EUR][1000 genomes]
rs7043770	0.95[CHB][hapmap]
rs7044122	0.82[EUR][1000 genomes]
rs7045018	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs7049101	0.81[EUR][1000 genomes]
rs7049176	0.91[EUR][1000 genomes]
rs7389047	0.83[EUR][1000 genomes]
rs7389629	0.96[CEU][hapmap];0.95[CHB][hapmap]
rs7466716	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7466717	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7467156	0.82[CEU][hapmap]
rs7467207	0.82[CEU][hapmap]
rs770524	0.84[CEU][hapmap]
rs7847144	1.00[CEU][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7849380	0.95[CHB][hapmap]
rs7854714	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7855235	0.97[EUR][1000 genomes]
rs7859780	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs7860528	0.95[CHB][hapmap]
rs7860623	0.80[EUR][1000 genomes]
rs7860755	0.89[CEU][hapmap];0.95[CHB][hapmap];0.81[EUR][1000 genomes]
rs7860869	0.82[CEU][hapmap]
rs7861004	0.96[EUR][1000 genomes]
rs7863088	0.96[CEU][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs7868779	0.90[EUR][1000 genomes]
rs7873152	0.85[CEU][hapmap]
rs7873776	0.89[CEU][hapmap];0.95[CHB][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7874533	0.96[CEU][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs7875367	0.85[CEU][hapmap];0.83[MEX][hapmap]
rs9298740	0.82[CEU][hapmap]
rs9298741	0.82[CEU][hapmap]
rs950234	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs954663	0.85[CEU][hapmap]
rs955369	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9650685	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9696751	0.80[EUR][1000 genomes]
rs9886731	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv466262	chr9:15615321-15727518	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv613657	chr9:15615321-15727518	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv613658	chr9:15636260-15727518	Strong transcription Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv466263	chr9:15641279-15726057	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv613659	chr9:15641279-15726057	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv892634	chr9:15696501-15746168	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1396708	C9orf93	cis	parietal	SCAN
rs1396708	C9orf93	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15669000-15720800	Weak transcription	Gastric	stomach
2	chr9:15676600-15725000	Weak transcription	Pancreas	Pancrea
3	chr9:15679800-15746800	Weak transcription	Ovary	ovary
4	chr9:15687600-15746600	Weak transcription	Aorta	Aorta
5	chr9:15690400-15721800	Weak transcription	Fetal Lung	lung
6	chr9:15691800-15717000	Weak transcription	Thymus	Thymus
7	chr9:15694200-15705600	Weak transcription	Adipose Nuclei	Adipose
8	chr9:15697800-15706400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:15699600-15717400	Weak transcription	Fetal Stomach	stomach
10	chr9:15699600-15728200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr9:15702600-15709200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:15704000-15716600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr9:15704600-15719800	Weak transcription	Right Ventricle	heart
14	chr9:15704800-15706600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:15705400-15708200	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links