Variant report

Variant	rs12346205
Chromosome Location	chr9:15767898-15767899
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10733301	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10733302	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10738411	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10738413	0.81[EUR][1000 genomes]
rs10756692	0.81[AMR][1000 genomes]
rs10756696	0.85[AMR][1000 genomes]
rs10756697	0.86[AMR][1000 genomes]
rs10756703	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10756704	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10810435	0.84[AMR][1000 genomes]
rs10810436	0.86[AMR][1000 genomes]
rs10810439	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10810442	0.85[EUR][1000 genomes]
rs10810450	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10810451	0.81[EUR][1000 genomes]
rs10962142	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10962149	0.85[EUR][1000 genomes]
rs10962151	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10962156	0.80[ASN][1000 genomes]
rs10962157	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10962158	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10962161	0.84[AMR][1000 genomes]
rs10962162	0.85[AMR][1000 genomes]
rs10962163	0.82[EUR][1000 genomes]
rs10962167	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12057012	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12552653	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12553816	0.86[AMR][1000 genomes]
rs13287834	0.81[ASN][1000 genomes]
rs13296276	0.83[ASN][1000 genomes]
rs1396708	0.80[AMR][1000 genomes]
rs1592099	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2105315	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2105317	0.81[EUR][1000 genomes]
rs2105318	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2105319	0.82[EUR][1000 genomes]
rs2211323	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2891002	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4146290	0.84[EUR][1000 genomes]
rs4146291	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4740624	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4740625	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4740626	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4741535	0.82[AMR][1000 genomes]
rs6474966	0.80[EUR][1000 genomes]
rs6474967	0.80[ASN][1000 genomes]
rs6474974	0.81[EUR][1000 genomes]
rs7045018	0.85[EUR][1000 genomes]
rs7466716	0.82[EUR][1000 genomes]
rs7466717	0.81[AMR][1000 genomes]
rs7860755	0.80[EUR][1000 genomes]
rs950234	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs955369	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9886731	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15742600-15769600	Weak transcription	Psoas Muscle	Psoas
2	chr9:15756200-15790800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:15759200-15784400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:15763600-15774400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:15766000-15770600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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