Variant report

Variant	rs13296360
Chromosome Location	chr9:15810787-15810788
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 196 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:187)

rs_ID	r²[population]
rs1009468	1.00[CEU][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10733301	0.80[ASN][1000 genomes]
rs10733302	0.80[ASN][1000 genomes]
rs10733305	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10738413	0.88[ASN][1000 genomes]
rs10738417	0.90[CHB][hapmap]
rs10738419	0.86[CHB][hapmap]
rs10738420	0.85[CHB][hapmap]
rs10756679	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10756697	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10756704	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs10756709	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs10756710	1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs10756711	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs10756714	0.90[CHB][hapmap]
rs10756715	0.90[CHB][hapmap]
rs10756720	0.90[CHB][hapmap]
rs10756722	0.85[CHB][hapmap]
rs10756726	0.86[CHB][hapmap]
rs10756728	0.86[CHB][hapmap]
rs10756729	0.86[CHB][hapmap]
rs10810439	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10810446	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10810450	0.91[ASN][1000 genomes]
rs10810451	0.89[ASN][1000 genomes]
rs10810452	0.82[ASN][1000 genomes]
rs10810455	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10810461	0.90[CHB][hapmap]
rs10810462	0.90[CHB][hapmap]
rs10810483	0.85[CHB][hapmap]
rs10810484	0.85[CHB][hapmap]
rs10810485	0.85[CHB][hapmap]
rs10810486	0.90[CHB][hapmap]
rs10810487	0.90[CHB][hapmap]
rs10810488	0.90[CHB][hapmap]
rs10810501	0.86[CHB][hapmap]
rs10810502	0.86[CHB][hapmap]
rs10810506	0.86[CHB][hapmap]
rs10810509	0.86[CHB][hapmap]
rs10962110	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs10962142	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10962147	0.81[EUR][1000 genomes]
rs10962151	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs10962152	0.80[EUR][1000 genomes]
rs10962156	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10962157	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10962158	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10962163	0.88[ASN][1000 genomes]
rs10962167	0.91[ASN][1000 genomes]
rs10962169	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10962170	1.00[CEU][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10962171	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10962225	0.85[CHB][hapmap]
rs10962227	0.90[CHB][hapmap]
rs11515218	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11521158	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12057012	0.83[ASN][1000 genomes]
rs12349973	0.86[ASN][1000 genomes]
rs12377532	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12378499	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12379234	0.84[CHB][hapmap]
rs12552653	0.83[ASN][1000 genomes]
rs1328283	0.85[CHB][hapmap]
rs1328286	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs13283620	0.81[EUR][1000 genomes]
rs13287834	0.85[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13295778	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13296276	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1341732	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs1341735	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1341737	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1341738	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1359952	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs1396708	0.95[CHB][hapmap]
rs1410444	0.85[CHB][hapmap]
rs1539172	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1539173	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1572978	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1578558	0.96[YRI][hapmap]
rs1592099	1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs1927696	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs1927698	0.85[CHB][hapmap]
rs2105315	1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs2105317	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2105318	0.84[ASN][1000 genomes]
rs2105319	0.91[ASN][1000 genomes]
rs2105320	0.89[YRI][hapmap]
rs2153725	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2153726	1.00[CEU][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2153727	1.00[CEU][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2185663	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2185665	0.87[CEU][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2211323	0.89[ASN][1000 genomes]
rs2225181	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs2225182	0.86[CHB][hapmap]
rs2382540	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2382553	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2987009	0.95[CHB][hapmap]
rs2987010	0.90[CHB][hapmap]
rs2987011	0.95[CHB][hapmap]
rs2987012	0.95[CHB][hapmap]
rs2987013	0.95[CHB][hapmap]
rs2987014	0.94[CHB][hapmap]
rs3008666	0.95[CHB][hapmap]
rs3008681	0.95[CHB][hapmap]
rs3008747	0.95[CHB][hapmap]
rs3008748	0.95[CHB][hapmap]
rs3008749	0.95[CHB][hapmap]
rs3008751	0.85[CHB][hapmap]
rs3008753	0.95[CHB][hapmap]
rs34455558	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35971661	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4146290	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs4146291	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs4146293	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4472620	0.85[CHB][hapmap]
rs4582646	0.85[CHB][hapmap]
rs4740624	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4740628	0.90[CHB][hapmap]
rs4741535	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs4741542	0.89[ASN][1000 genomes]
rs4741545	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs4741546	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs4741548	0.86[CHB][hapmap]
rs4741552	0.86[CHB][hapmap]
rs4741553	0.86[CHB][hapmap]
rs56401042	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6474967	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes]
rs6474974	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7018872	0.80[EUR][1000 genomes]
rs7019143	0.81[EUR][1000 genomes]
rs7019205	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7019323	0.81[EUR][1000 genomes]
rs7019851	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs7024440	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7032457	1.00[CEU][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7032634	1.00[CEU][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7043770	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7047045	1.00[CEU][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs735962	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs7389629	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7466716	0.89[ASN][1000 genomes]
rs7466717	0.83[ASN][1000 genomes]
rs7470881	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs770194	0.82[YRI][hapmap]
rs7846970	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7849380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7852250	0.86[YRI][hapmap]
rs7853744	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7857126	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7857495	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7857601	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7860528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7860755	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs7860992	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7861802	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7866641	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7866894	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7871232	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7873776	1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs9298738	1.00[CEU][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9298739	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs9406534	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9406536	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9406537	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9406539	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9406540	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9406541	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9406542	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9407645	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9407648	1.00[CEU][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9407649	0.93[CEU][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9407650	1.00[CEU][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9407651	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9407652	1.00[CEU][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9407653	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9407654	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9407655	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9407656	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9407657	1.00[CEU][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9407658	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9407661	0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs950234	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs955369	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs961117	0.85[CHB][hapmap]
rs9650685	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9886731	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv892636	chr9:15794858-15876507	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv613660	chr9:15794897-15817119	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv6486	chr9:15805220-15837639	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15805600-15812600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:15810600-15811000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:15810600-15811000	ZNF genes & repeats	Aorta	Aorta
4	chr9:15810600-15811000	ZNF genes & repeats	Ovary	ovary
5	chr9:15810600-15811200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:15810600-15811200	ZNF genes & repeats	Pancreas	Pancrea

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