Variant report

Variant	rs9407656
Chromosome Location	chr9:15832086-15832087
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs1009468	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10738415	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1081245	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10962147	0.81[AFR][1000 genomes]
rs10962152	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10962153	0.88[AFR][1000 genomes]
rs10962156	0.87[AFR][1000 genomes]
rs10962169	0.87[AMR][1000 genomes]
rs10962170	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10962171	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10962173	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11515218	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11521158	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1183919	0.83[AFR][1000 genomes]
rs12377532	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13283620	0.84[AFR][1000 genomes]
rs13287834	0.85[AFR][1000 genomes]
rs13295778	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs13296360	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13302398	0.82[AFR][1000 genomes]
rs1341735	0.85[AFR][1000 genomes]
rs1341737	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1341738	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1539173	0.83[AFR][1000 genomes]
rs1572978	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1582200	0.83[AFR][1000 genomes]
rs1970497	0.88[AFR][1000 genomes]
rs2066292	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2096121	0.85[AFR][1000 genomes]
rs2153725	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2153726	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2153727	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2185665	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2382540	0.83[AFR][1000 genomes]
rs2382553	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2891007	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34455558	0.81[EUR][1000 genomes]
rs35971661	0.84[AMR][1000 genomes]
rs36013000	0.81[AFR][1000 genomes]
rs4146293	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56401042	0.82[AMR][1000 genomes]
rs58517712	0.86[AFR][1000 genomes]
rs62571268	0.83[AFR][1000 genomes]
rs7019143	0.81[AFR][1000 genomes]
rs7019205	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7019323	0.86[AFR][1000 genomes]
rs7024440	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7032457	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7032634	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7036775	0.80[AFR][1000 genomes]
rs7039881	0.83[AFR][1000 genomes]
rs7047045	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7388793	0.83[AFR][1000 genomes]
rs7470881	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs770191	0.89[AFR][1000 genomes]
rs770201	0.83[AFR][1000 genomes]
rs770207	0.83[AFR][1000 genomes]
rs7846970	0.86[AFR][1000 genomes]
rs7849380	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7853744	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7856877	0.83[AFR][1000 genomes]
rs7857126	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7857495	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7857601	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7860354	0.83[AFR][1000 genomes]
rs7860528	0.86[AFR][1000 genomes]
rs7861802	0.87[AFR][1000 genomes]
rs7866641	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7866894	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7869624	0.82[AFR][1000 genomes]
rs7871232	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7872912	0.83[AFR][1000 genomes]
rs809493	0.83[AFR][1000 genomes]
rs9298738	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9298739	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9298740	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9298741	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9406534	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9406536	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9406537	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9406539	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9406540	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9406541	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9406542	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9406545	0.88[ASN][1000 genomes]
rs9407645	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9407648	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9407649	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9407650	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9407651	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9407652	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9407653	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9407654	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9407655	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9407657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9407658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9407659	0.83[AMR][1000 genomes]
rs9407660	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9407661	0.92[ASN][1000 genomes]
rs9407662	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9407664	0.83[AFR][1000 genomes]
rs9407668	0.83[AFR][1000 genomes]
rs9407669	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv892636	chr9:15794858-15876507	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv6486	chr9:15805220-15837639	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv508536	chr9:15811619-15834267	Enhancers Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
10	nsv613666	chr9:15823667-15875162	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv613667	chr9:15823667-15876507	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15827000-15834600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:15830200-15857200	Weak transcription	Primary hematopoietic stem cells	blood

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