Variant report

Variant	rs56401042
Chromosome Location	chr9:15806573-15806574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs1009468	0.87[AMR][1000 genomes]
rs10738413	0.86[ASN][1000 genomes]
rs10756704	0.83[ASN][1000 genomes]
rs10810440	0.81[EUR][1000 genomes]
rs10810446	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10810450	0.89[ASN][1000 genomes]
rs10810451	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10962146	0.81[EUR][1000 genomes]
rs10962147	0.83[EUR][1000 genomes]
rs10962151	0.81[ASN][1000 genomes]
rs10962152	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10962153	0.83[EUR][1000 genomes]
rs10962156	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10962157	0.85[ASN][1000 genomes]
rs10962158	0.85[ASN][1000 genomes]
rs10962163	0.86[ASN][1000 genomes]
rs10962167	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10962169	0.84[AMR][1000 genomes]
rs10962170	0.87[AMR][1000 genomes]
rs10962171	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11515218	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11521158	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12057012	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12349973	0.84[ASN][1000 genomes]
rs12377532	0.80[AMR][1000 genomes]
rs12552653	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13283620	0.83[EUR][1000 genomes]
rs13287834	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13295778	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13296276	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13296360	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1341735	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1341737	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1341738	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1539171	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1539172	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1539173	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1572978	0.84[AMR][1000 genomes]
rs1970497	0.83[EUR][1000 genomes]
rs2105317	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2105318	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2105319	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2153725	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2153726	0.84[AMR][1000 genomes]
rs2153727	0.82[AMR][1000 genomes]
rs2185663	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2185665	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2211323	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2382540	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2382553	0.86[AMR][1000 genomes]
rs35971661	0.80[AMR][1000 genomes]
rs36013000	0.80[EUR][1000 genomes]
rs36197458	0.83[AMR][1000 genomes]
rs4146290	0.83[ASN][1000 genomes]
rs4146291	0.83[ASN][1000 genomes]
rs4146293	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4741542	0.87[ASN][1000 genomes]
rs58517712	0.83[EUR][1000 genomes]
rs62571305	0.80[AMR][1000 genomes]
rs6474964	0.80[AMR][1000 genomes]
rs6474967	0.85[AMR][1000 genomes]
rs6474974	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7018872	0.85[EUR][1000 genomes]
rs7019143	0.83[EUR][1000 genomes]
rs7019323	0.83[EUR][1000 genomes]
rs7019851	0.83[EUR][1000 genomes]
rs7024440	0.84[AMR][1000 genomes]
rs7032457	0.86[AMR][1000 genomes]
rs7032634	0.87[AMR][1000 genomes]
rs7034781	0.81[EUR][1000 genomes]
rs7043770	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7047045	0.87[AMR][1000 genomes]
rs7466716	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7466717	0.81[ASN][1000 genomes]
rs7470881	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7846970	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7849380	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7853744	0.84[AMR][1000 genomes]
rs7857126	0.84[AMR][1000 genomes]
rs7857495	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7857601	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7860528	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7860755	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7860992	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7861802	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7866641	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7866894	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7871232	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7873776	0.86[ASN][1000 genomes]
rs9298738	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9298740	0.87[EUR][1000 genomes]
rs9298741	0.87[EUR][1000 genomes]
rs9406534	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9406536	0.87[AMR][1000 genomes]
rs9406537	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9406539	0.84[AMR][1000 genomes]
rs9406540	0.85[AMR][1000 genomes]
rs9406541	0.85[AMR][1000 genomes]
rs9406542	0.83[AMR][1000 genomes]
rs9407648	0.87[AMR][1000 genomes]
rs9407649	0.82[AMR][1000 genomes]
rs9407650	0.87[AMR][1000 genomes]
rs9407651	0.86[AMR][1000 genomes]
rs9407652	0.85[AMR][1000 genomes]
rs9407653	0.84[AMR][1000 genomes]
rs9407654	0.83[AMR][1000 genomes]
rs9407655	0.82[AMR][1000 genomes]
rs9407656	0.82[AMR][1000 genomes]
rs9407657	0.82[AMR][1000 genomes]
rs9407658	0.82[AMR][1000 genomes]
rs9407661	0.81[AFR][1000 genomes]
rs955369	0.85[ASN][1000 genomes]
rs9650685	0.88[ASN][1000 genomes]
rs9886731	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv892636	chr9:15794858-15876507	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv613660	chr9:15794897-15817119	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv6486	chr9:15805220-15837639	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15777000-15810600	Weak transcription	Pancreas	Pancrea
2	chr9:15785000-15808600	Weak transcription	Aorta	Aorta
3	chr9:15805600-15812600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links