Variant report

Variant	rs36197458
Chromosome Location	chr9:15790809-15790810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10738413	0.84[ASN][1000 genomes]
rs10756704	0.83[ASN][1000 genomes]
rs10810446	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10810450	0.81[ASN][1000 genomes]
rs10962146	0.81[AMR][1000 genomes]
rs10962151	0.80[ASN][1000 genomes]
rs10962152	0.84[AMR][1000 genomes]
rs10962153	0.82[AMR][1000 genomes]
rs10962156	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10962157	0.84[ASN][1000 genomes]
rs10962158	0.82[ASN][1000 genomes]
rs10962163	0.81[ASN][1000 genomes]
rs10962167	0.81[ASN][1000 genomes]
rs11515218	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11521158	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13287834	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13295778	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13296276	0.82[AMR][1000 genomes]
rs1341734	0.81[AMR][1000 genomes]
rs1341735	0.87[AMR][1000 genomes]
rs1341738	0.81[AMR][1000 genomes]
rs1396706	0.81[AMR][1000 genomes]
rs1539172	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1539173	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1970497	0.82[AMR][1000 genomes]
rs2096121	0.81[AMR][1000 genomes]
rs2185663	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2211323	0.82[ASN][1000 genomes]
rs2382540	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34700988	0.81[AMR][1000 genomes]
rs4146290	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4146291	0.83[ASN][1000 genomes]
rs4146293	0.81[AMR][1000 genomes]
rs4741542	0.82[ASN][1000 genomes]
rs56401042	0.83[AMR][1000 genomes]
rs58517712	0.82[AMR][1000 genomes]
rs62571268	0.81[AMR][1000 genomes]
rs62571305	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6474974	0.80[ASN][1000 genomes]
rs7018872	0.81[AMR][1000 genomes]
rs7019143	0.81[AMR][1000 genomes]
rs7019323	0.81[AMR][1000 genomes]
rs7025420	0.82[AMR][1000 genomes]
rs7036775	0.81[AMR][1000 genomes]
rs7043770	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7466716	0.83[ASN][1000 genomes]
rs7846970	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7849380	0.81[AMR][1000 genomes]
rs7860528	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7860755	0.83[ASN][1000 genomes]
rs7860869	0.81[AMR][1000 genomes]
rs7860992	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7861802	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7866894	0.81[AMR][1000 genomes]
rs7869624	0.81[AMR][1000 genomes]
rs7872912	0.81[AMR][1000 genomes]
rs7873776	0.84[ASN][1000 genomes]
rs955369	0.84[ASN][1000 genomes]
rs9886731	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15777000-15810600	Weak transcription	Pancreas	Pancrea
2	chr9:15779000-15791200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr9:15783600-15802000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:15785000-15808600	Weak transcription	Aorta	Aorta
5	chr9:15787000-15791200	Weak transcription	Esophagus	oesophagus
6	chr9:15787200-15796800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:15787200-15799600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr9:15790200-15800000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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