Variant report

Variant	rs10962169
Chromosome Location	chr9:15809900-15809901
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1009468	0.92[AMR][1000 genomes]
rs10962170	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10962171	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10962173	0.80[AMR][1000 genomes]
rs11515218	0.84[AMR][1000 genomes]
rs11521158	0.84[AMR][1000 genomes]
rs12377532	0.92[AMR][1000 genomes]
rs13295778	0.80[AMR][1000 genomes]
rs13296360	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1341737	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1341738	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1572978	0.93[AMR][1000 genomes]
rs2153725	0.87[AMR][1000 genomes]
rs2153726	0.89[AMR][1000 genomes]
rs2153727	0.87[AMR][1000 genomes]
rs2185665	0.87[AMR][1000 genomes]
rs2382553	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34455558	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35971661	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4146293	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56401042	0.84[AMR][1000 genomes]
rs7019205	0.89[AMR][1000 genomes]
rs7024440	0.89[AMR][1000 genomes]
rs7032457	0.93[AMR][1000 genomes]
rs7032634	0.92[AMR][1000 genomes]
rs7047045	0.92[AMR][1000 genomes]
rs7470881	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7849380	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7853744	0.85[AMR][1000 genomes]
rs7857126	0.85[AMR][1000 genomes]
rs7857495	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7857601	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7866641	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7866894	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7871232	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9298738	0.87[AMR][1000 genomes]
rs9298739	0.83[AMR][1000 genomes]
rs9406534	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9406536	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9406537	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9406539	0.93[AMR][1000 genomes]
rs9406540	0.94[AMR][1000 genomes]
rs9406541	0.91[AMR][1000 genomes]
rs9406542	0.88[AMR][1000 genomes]
rs9407645	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9407648	0.92[AMR][1000 genomes]
rs9407649	0.87[AMR][1000 genomes]
rs9407650	0.92[AMR][1000 genomes]
rs9407651	0.91[AMR][1000 genomes]
rs9407652	0.91[AMR][1000 genomes]
rs9407653	0.89[AMR][1000 genomes]
rs9407654	0.88[AMR][1000 genomes]
rs9407655	0.87[AMR][1000 genomes]
rs9407656	0.87[AMR][1000 genomes]
rs9407657	0.87[AMR][1000 genomes]
rs9407658	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv892636	chr9:15794858-15876507	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv613660	chr9:15794897-15817119	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv6486	chr9:15805220-15837639	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15777000-15810600	Weak transcription	Pancreas	Pancrea
2	chr9:15805600-15812600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:15807800-15810600	Weak transcription	Ovary	ovary
4	chr9:15808000-15810600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr9:15808800-15810000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:15809800-15810600	Weak transcription	Aorta	Aorta

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