Variant report

Variant	rs9407669
Chromosome Location	chr9:15857402-15857403
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1009468	0.88[ASN][1000 genomes]
rs10738415	0.87[ASN][1000 genomes]
rs1081245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10962152	0.81[AFR][1000 genomes]
rs10962153	0.81[AFR][1000 genomes]
rs10962156	0.81[AFR][1000 genomes]
rs11515218	0.81[AFR][1000 genomes]
rs11521158	0.81[AFR][1000 genomes]
rs1183919	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12377532	0.87[ASN][1000 genomes]
rs1572978	0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1582200	0.86[AFR][1000 genomes]
rs1970497	0.81[AFR][1000 genomes]
rs2066292	0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2153725	0.90[ASN][1000 genomes]
rs2153726	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2153727	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2185665	0.90[ASN][1000 genomes]
rs2382553	0.83[AFR][1000 genomes]
rs2891007	0.88[ASN][1000 genomes]
rs7019205	0.89[ASN][1000 genomes]
rs7024440	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7032457	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7032634	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7039881	0.85[AFR][1000 genomes]
rs7047045	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7388793	0.84[AFR][1000 genomes]
rs770191	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs770200	0.83[AFR][1000 genomes]
rs770201	0.86[AFR][1000 genomes]
rs770207	0.85[AFR][1000 genomes]
rs770211	0.80[EUR][1000 genomes]
rs770213	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7846970	0.80[AFR][1000 genomes]
rs7853744	0.90[ASN][1000 genomes]
rs7856877	0.83[AFR][1000 genomes]
rs7857126	0.90[ASN][1000 genomes]
rs7860354	0.85[AFR][1000 genomes]
rs7860528	0.80[AFR][1000 genomes]
rs7861802	0.81[AFR][1000 genomes]
rs809493	0.85[AFR][1000 genomes]
rs9298738	0.87[ASN][1000 genomes]
rs9298739	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9298740	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9298741	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9406539	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9406540	0.89[ASN][1000 genomes]
rs9406541	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9406542	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9406545	0.84[ASN][1000 genomes]
rs9407648	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9407649	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9407650	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9407651	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9407652	0.90[ASN][1000 genomes]
rs9407653	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9407654	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9407655	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9407656	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9407657	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9407658	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9407660	0.90[ASN][1000 genomes]
rs9407661	0.87[ASN][1000 genomes]
rs9407662	0.95[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9407664	0.85[AFR][1000 genomes]
rs9407668	0.87[AFR][1000 genomes]
rs9407671	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv892636	chr9:15794858-15876507	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv613666	chr9:15823667-15875162	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv613667	chr9:15823667-15876507	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1016226	chr9:15841107-15875321	ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1015435	chr9:15841107-15880385	Enhancers ZNF genes & repeats Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1032081	chr9:15845902-15878115	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1027790	chr9:15845902-15878841	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv519593	chr9:15855317-15861885	Weak transcription ZNF genes & repeats Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15845000-15858800	Weak transcription	Thymus	Thymus
2	chr9:15847200-15857600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:15849000-15873800	Weak transcription	Fetal Lung	lung
4	chr9:15857200-15857800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
5	chr9:15857400-15858000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:15857400-15858200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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