Variant report

Variant	rs9407671
Chromosome Location	chr9:15882615-15882616
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15876069..15878996-chr9:15881161..15882668,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1009468	0.83[YRI][hapmap]
rs1081245	0.80[AFR][1000 genomes]
rs10962147	0.87[YRI][hapmap]
rs10962152	0.93[YRI][hapmap]
rs10962153	0.93[YRI][hapmap]
rs10962156	0.93[YRI][hapmap]
rs10962170	0.82[YRI][hapmap]
rs13287834	0.85[YRI][hapmap]
rs1341738	0.82[YRI][hapmap]
rs1539173	0.93[YRI][hapmap]
rs1572978	0.97[YRI][hapmap]
rs1582200	0.91[AFR][1000 genomes]
rs2066292	0.84[YRI][hapmap];0.80[AFR][1000 genomes]
rs2096121	0.90[YRI][hapmap]
rs2153726	0.82[YRI][hapmap]
rs2153727	0.83[YRI][hapmap]
rs2382540	0.93[YRI][hapmap]
rs2382553	0.97[YRI][hapmap]
rs2987055	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2987056	0.84[ASN][1000 genomes]
rs3008699	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3008701	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3008702	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4146293	0.82[YRI][hapmap]
rs7032457	0.83[YRI][hapmap]
rs7032634	0.82[YRI][hapmap]
rs7039881	0.97[YRI][hapmap];0.92[AFR][1000 genomes]
rs7047045	0.82[YRI][hapmap]
rs7388793	0.97[YRI][hapmap];0.91[AFR][1000 genomes]
rs770191	0.96[YRI][hapmap]
rs770200	0.97[YRI][hapmap];0.91[AFR][1000 genomes]
rs770201	0.97[YRI][hapmap];0.94[AFR][1000 genomes]
rs770205	0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs770207	0.97[YRI][hapmap];0.93[AFR][1000 genomes]
rs7856877	0.91[AFR][1000 genomes]
rs7860354	0.92[AFR][1000 genomes]
rs7860528	0.97[YRI][hapmap]
rs7872912	0.81[YRI][hapmap]
rs809493	0.93[AFR][1000 genomes]
rs9298739	0.92[YRI][hapmap]
rs9298740	1.00[YRI][hapmap]
rs9298741	0.97[YRI][hapmap]
rs9406542	0.96[YRI][hapmap]
rs9407648	0.82[YRI][hapmap]
rs9407649	0.82[YRI][hapmap]
rs9407650	0.82[YRI][hapmap]
rs9407651	0.97[YRI][hapmap]
rs9407652	0.81[YRI][hapmap]
rs9407654	0.96[YRI][hapmap]
rs9407657	0.96[YRI][hapmap]
rs9407662	0.97[YRI][hapmap]
rs9407664	0.92[AFR][1000 genomes]
rs9407668	0.93[AFR][1000 genomes]
rs9407669	0.80[AFR][1000 genomes]
rs9407672	0.85[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15857800-15885400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:15877000-15903400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:15877400-15885800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:15877600-15888400	Weak transcription	Pancreas	Pancrea
5	chr9:15879000-15885400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:15882200-15882800	Enhancers	HUES64 Cell Line	embryonic stem cell

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