Variant report

Variant	rs9407672
Chromosome Location	chr9:15892001-15892002
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2987055	0.93[JPT][hapmap]
rs3008699	0.93[JPT][hapmap]
rs3008701	0.84[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs3008702	0.93[JPT][hapmap]
rs7034388	0.85[AFR][1000 genomes]
rs9406556	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs9407671	0.85[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15877000-15903400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:15884200-15892200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:15885800-15892200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr9:15889000-15892800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:15890400-15893400	Weak transcription	Osteobl	bone
6	chr9:15891800-15892800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr9:15891800-15893400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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