Variant report

Variant	rs770211
Chromosome Location	chr9:15887965-15887966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs1009468	1.00[CHB][hapmap]
rs10283865	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs10810428	0.83[CHB][hapmap]
rs10810429	0.82[CHB][hapmap]
rs10810438	0.94[CHB][hapmap]
rs10810440	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs10810442	1.00[CHB][hapmap]
rs1081245	0.81[EUR][1000 genomes]
rs10962126	0.87[CHB][hapmap]
rs10962147	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs10962149	1.00[CHB][hapmap]
rs10962152	1.00[CHB][hapmap]
rs10962153	1.00[CHB][hapmap]
rs10962170	1.00[CHB][hapmap]
rs1169478	0.96[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1169479	0.96[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1169480	0.96[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1183919	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12341679	0.87[CHB][hapmap]
rs12377371	0.88[CHB][hapmap]
rs1328286	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs1328288	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1341734	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs1355173	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs1359953	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1396706	0.87[CHB][hapmap]
rs1536686	0.83[YRI][hapmap]
rs1539171	1.00[CHB][hapmap]
rs1572978	1.00[CHB][hapmap]
rs1891211	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1891212	0.83[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1927696	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs1984246	0.88[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2066292	0.94[CHB][hapmap]
rs2096121	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs2149231	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs2153725	1.00[CHB][hapmap]
rs2153726	1.00[CHB][hapmap]
rs2153727	1.00[CHB][hapmap]
rs2185665	1.00[CHB][hapmap]
rs2225181	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs2382553	1.00[CHB][hapmap]
rs2794634	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2794636	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2794645	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2794646	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2794647	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2891007	1.00[CHB][hapmap]
rs2987010	0.80[CEU][hapmap]
rs2987011	0.84[CEU][hapmap]
rs2987013	0.84[CEU][hapmap]
rs2987014	0.81[CEU][hapmap]
rs2987061	0.86[YRI][hapmap]
rs2987062	0.81[YRI][hapmap]
rs2987069	0.81[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap]
rs2987070	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs2987071	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2987072	0.80[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3008678	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3008681	0.82[CEU][hapmap]
rs3008686	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3008747	0.85[CEU][hapmap]
rs3008748	0.85[CEU][hapmap]
rs4741534	0.81[CHB][hapmap]
rs6474954	0.81[CHB][hapmap]
rs6474966	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs7019205	1.00[CHB][hapmap]
rs7019851	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs7027202	0.88[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs7032457	1.00[CHB][hapmap]
rs7032634	1.00[CHB][hapmap]
rs7034781	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs7045018	1.00[CHB][hapmap]
rs7047045	1.00[CHB][hapmap]
rs735962	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs7467156	0.87[CHB][hapmap]
rs7467207	0.81[CHB][hapmap]
rs770191	0.84[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs770213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs770215	0.89[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7853744	1.00[CHB][hapmap]
rs7860869	0.87[CHB][hapmap]
rs7861456	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7866641	1.00[CHB][hapmap]
rs7869624	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs7872912	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs9298738	1.00[CHB][hapmap]
rs9298739	1.00[CHB][hapmap]
rs9298740	1.00[CHB][hapmap]
rs9298741	1.00[CHB][hapmap]
rs9406537	1.00[CHB][hapmap]
rs9406542	1.00[CHB][hapmap]
rs9407648	1.00[CHB][hapmap]
rs9407649	1.00[CHB][hapmap]
rs9407650	1.00[CHB][hapmap]
rs9407651	1.00[CHB][hapmap]
rs9407652	1.00[CHB][hapmap]
rs9407654	1.00[CHB][hapmap]
rs9407657	1.00[CHB][hapmap]
rs9407661	1.00[CHB][hapmap]
rs9407662	1.00[CHB][hapmap]
rs9407669	0.80[EUR][1000 genomes]
rs9650686	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15877000-15903400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:15877600-15888400	Weak transcription	Pancreas	Pancrea
3	chr9:15884200-15891800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:15884200-15892200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:15885800-15892200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr9:15886000-15889000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:15886800-15889000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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