Variant report

Variant	rs2149231
Chromosome Location	chr9:15953591-15953592
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 154 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:151)

rs_ID	r²[population]
rs1009468	1.00[CHB][hapmap]
rs10283865	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs1080485	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10810440	0.88[CHB][hapmap]
rs10810442	0.89[CHB][hapmap]
rs10962147	0.89[CHB][hapmap]
rs10962149	0.89[CHB][hapmap]
rs10962152	0.89[CHB][hapmap]
rs10962153	0.89[CHB][hapmap]
rs10962170	0.89[CHB][hapmap]
rs1169478	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs1169479	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs1169480	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1328265	0.90[EUR][1000 genomes]
rs1328269	0.89[EUR][1000 genomes]
rs1328271	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1328288	0.86[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs1341734	0.89[CHB][hapmap]
rs1355173	0.89[CHB][hapmap]
rs1359950	0.81[EUR][1000 genomes]
rs1359953	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs1539171	1.00[CHB][hapmap]
rs1572978	0.89[CHB][hapmap]
rs1576171	0.89[EUR][1000 genomes]
rs1891211	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1891212	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs1927699	0.89[EUR][1000 genomes]
rs1927700	0.89[EUR][1000 genomes]
rs1927701	0.89[EUR][1000 genomes]
rs1927702	0.89[EUR][1000 genomes]
rs1984246	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs2017943	0.89[EUR][1000 genomes]
rs2066292	0.94[CHB][hapmap]
rs2094522	0.89[EUR][1000 genomes]
rs2096121	0.89[CHB][hapmap]
rs2153725	0.89[CHB][hapmap]
rs2153726	0.89[CHB][hapmap]
rs2153727	1.00[CHB][hapmap]
rs2185665	0.89[CHB][hapmap]
rs2382543	0.89[EUR][1000 genomes]
rs2382544	0.89[EUR][1000 genomes]
rs2382545	0.86[EUR][1000 genomes]
rs2382547	0.88[EUR][1000 genomes]
rs2382548	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2382553	0.89[CHB][hapmap]
rs2794634	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs2794636	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs2860316	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2891007	0.89[CHB][hapmap]
rs2987008	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2987009	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2987010	0.93[EUR][1000 genomes]
rs2987011	0.93[EUR][1000 genomes]
rs2987012	0.93[EUR][1000 genomes]
rs2987013	0.88[EUR][1000 genomes]
rs2987014	0.89[EUR][1000 genomes]
rs2987016	0.90[EUR][1000 genomes]
rs2987017	0.89[EUR][1000 genomes]
rs2987018	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2987019	0.89[EUR][1000 genomes]
rs2987020	0.88[EUR][1000 genomes]
rs2987021	0.89[EUR][1000 genomes]
rs2987022	0.89[EUR][1000 genomes]
rs2987023	0.89[EUR][1000 genomes]
rs2987024	0.89[EUR][1000 genomes]
rs2987025	0.90[EUR][1000 genomes]
rs2987039	0.89[EUR][1000 genomes]
rs2987041	0.88[EUR][1000 genomes]
rs2987042	0.89[EUR][1000 genomes]
rs2987069	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2987070	0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2987071	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2987072	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2987079	0.89[EUR][1000 genomes]
rs2987081	0.89[EUR][1000 genomes]
rs2987086	0.88[EUR][1000 genomes]
rs2987090	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2987096	0.89[EUR][1000 genomes]
rs2987098	0.84[EUR][1000 genomes]
rs2987099	0.85[EUR][1000 genomes]
rs3008666	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3008672	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3008678	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3008686	0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs3008710	0.85[EUR][1000 genomes]
rs3008714	0.91[EUR][1000 genomes]
rs3008715	0.89[EUR][1000 genomes]
rs3008717	0.88[EUR][1000 genomes]
rs3008719	0.89[EUR][1000 genomes]
rs3008723	0.89[EUR][1000 genomes]
rs3008726	0.89[EUR][1000 genomes]
rs3008727	0.89[EUR][1000 genomes]
rs3008728	0.89[EUR][1000 genomes]
rs3008729	0.87[EUR][1000 genomes]
rs3008730	0.89[EUR][1000 genomes]
rs3008732	0.89[EUR][1000 genomes]
rs3008736	0.89[EUR][1000 genomes]
rs3008739	0.89[EUR][1000 genomes]
rs3008742	0.91[EUR][1000 genomes]
rs3008744	0.92[EUR][1000 genomes]
rs3008745	0.88[EUR][1000 genomes]
rs3008747	0.86[EUR][1000 genomes]
rs3008748	0.91[EUR][1000 genomes]
rs3008749	0.93[EUR][1000 genomes]
rs3008753	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3118736	0.89[EUR][1000 genomes]
rs3124460	0.80[ASN][1000 genomes]
rs3124461	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4333709	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4475627	0.89[EUR][1000 genomes]
rs6474966	0.82[CHB][hapmap]
rs6474987	0.89[EUR][1000 genomes]
rs6474988	0.89[EUR][1000 genomes]
rs6474989	0.89[EUR][1000 genomes]
rs7019205	1.00[CHB][hapmap]
rs7019851	1.00[CHB][hapmap]
rs7023326	0.83[EUR][1000 genomes]
rs7027202	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs7032457	1.00[CHB][hapmap]
rs7032634	0.89[CHB][hapmap]
rs7045018	0.89[CHB][hapmap]
rs7047045	0.89[CHB][hapmap]
rs723756	0.88[EUR][1000 genomes]
rs770191	1.00[CHB][hapmap]
rs770211	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs770213	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs770215	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7853744	1.00[CHB][hapmap]
rs7866641	1.00[CHB][hapmap]
rs7869624	1.00[CHB][hapmap]
rs7872912	0.89[CHB][hapmap]
rs9298738	0.89[CHB][hapmap]
rs9298739	0.87[CHB][hapmap]
rs9298740	0.89[CHB][hapmap]
rs9298741	0.89[CHB][hapmap]
rs9406537	1.00[CHB][hapmap]
rs9406542	0.88[CHB][hapmap]
rs9406568	0.89[EUR][1000 genomes]
rs9406569	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9406581	0.87[EUR][1000 genomes]
rs9407648	0.88[CHB][hapmap]
rs9407649	0.89[CHB][hapmap]
rs9407650	0.89[CHB][hapmap]
rs9407651	0.89[CHB][hapmap]
rs9407652	0.89[CHB][hapmap]
rs9407654	1.00[CHB][hapmap]
rs9407657	0.89[CHB][hapmap]
rs9407661	0.89[CHB][hapmap]
rs9407662	0.89[CHB][hapmap]
rs9407697	0.88[EUR][1000 genomes]
rs9407702	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753625	chr9:15914055-15980320	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
3	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15943800-15954800	Weak transcription	Fetal Lung	lung
2	chr9:15952000-15954200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:15952000-15954800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:15952600-15987600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:15953000-15955800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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