Variant report

Variant	rs2987099
Chromosome Location	chr9:16018408-16018409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10738422	0.85[ASN][1000 genomes]
rs10738423	0.84[ASN][1000 genomes]
rs10738424	0.84[ASN][1000 genomes]
rs10756733	0.90[ASN][1000 genomes]
rs10756735	0.84[ASN][1000 genomes]
rs10756736	0.84[ASN][1000 genomes]
rs1080485	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10810514	0.85[ASN][1000 genomes]
rs10810519	0.84[ASN][1000 genomes]
rs10810520	0.84[ASN][1000 genomes]
rs10810521	0.84[ASN][1000 genomes]
rs10810522	0.83[ASN][1000 genomes]
rs10810523	0.83[ASN][1000 genomes]
rs10962256	0.88[ASN][1000 genomes]
rs11788695	0.84[ASN][1000 genomes]
rs12379466	0.85[ASN][1000 genomes]
rs1328265	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1328269	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1328271	0.91[EUR][1000 genomes]
rs1328273	0.85[ASN][1000 genomes]
rs1328274	0.85[ASN][1000 genomes]
rs1328276	0.82[ASN][1000 genomes]
rs1328278	0.84[ASN][1000 genomes]
rs1328279	0.84[ASN][1000 genomes]
rs1328280	0.84[ASN][1000 genomes]
rs1359950	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1359951	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1576171	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1887664	0.85[ASN][1000 genomes]
rs1887666	0.84[ASN][1000 genomes]
rs1887668	0.83[ASN][1000 genomes]
rs1927699	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1927700	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1927701	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1927702	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2017943	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2094522	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2149231	0.85[EUR][1000 genomes]
rs2382543	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2382544	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2382545	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2382546	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2382547	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2382548	0.88[EUR][1000 genomes]
rs2860316	0.91[EUR][1000 genomes]
rs2987008	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2987009	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2987010	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2987011	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2987012	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2987013	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2987014	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2987016	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2987017	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2987018	0.91[EUR][1000 genomes]
rs2987019	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2987020	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2987021	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2987022	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2987023	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2987024	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2987025	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2987039	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2987041	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2987042	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2987079	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2987081	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2987086	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2987090	0.90[EUR][1000 genomes]
rs2987096	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2987098	0.88[EUR][1000 genomes]
rs3008666	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3008672	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3008710	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3008714	0.92[EUR][1000 genomes]
rs3008715	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3008717	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3008719	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3008723	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3008726	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3008727	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3008728	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3008729	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3008730	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3008732	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3008736	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3008739	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3008742	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3008744	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3008745	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3008747	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3008748	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3008749	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3008753	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3118736	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3824502	0.90[ASN][1000 genomes]
rs4247294	0.84[ASN][1000 genomes]
rs4442245	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4475627	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4740632	0.84[ASN][1000 genomes]
rs4741557	0.84[ASN][1000 genomes]
rs6474987	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6474988	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6474989	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7023326	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs723756	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs752489	0.83[ASN][1000 genomes]
rs752490	0.84[ASN][1000 genomes]
rs9406581	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9407697	0.82[EUR][1000 genomes]
rs9407702	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs943787	0.84[ASN][1000 genomes]
rs943788	0.84[ASN][1000 genomes]
rs943789	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16018200-16028600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:16018400-16022400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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